Candidatus Nitrosopumilus sediminis: NSED_02600
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Entry
NSED_02600 CDS
T02303
Name
(GenBank) zinc finger TFIIB-type domain-containing protein
KO
K03124
transcription initiation factor TFIIB
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NSED_02600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nir03021
]
NSED_02600
Transcription machinery [BR:
nir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NSED_02600
Prokaryotic type
Archaeal type
TFB
NSED_02600
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Auto_anti-p27
Cys_knot
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
AFS82328
UniProt:
K0B873
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All DBs
Position
complement(436961..437914)
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AA seq
317 aa
AA seq
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MNILEKQNCPECKSTLVDDMQNGEIICSGCGVVVDDQIADFGPETISSNFEDKMKLARAT
GQTTYSQHDLGITTEISISAKDFSGKTINREVAGQMNNLRKWQQRVRVSSPRERRLANVL
AKMGETCEGLNLSKNVLETASMIYRNLDGHVDVKGKSVVSITAATIYMACKQCDVVRSLE
EICRGICPAKDVKSKTKLAARYYRTMVMEMGQLHAPVVTMDKYISKIANMTQTEVRVERL
ALEIAEKTKDSSIADGKAPNGIAAAYLYVASVLLGQNVLQRDVSSIAGVTEVTIRNRCKE
ILTCYKLKITLRPSLAN
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactagaaaaacaaaactgtcctgaatgtaaatctacattagtagatgacatg
cagaatggtgaaattatctgttctggttgcggcgttgtcgtcgatgatcagattgcagat
tttggtccagaaacaataagctcaaacttcgaagacaagatgaagcttgcaagagcaaca
ggacaaacaacctattctcaacatgatttgggaataactactgagatttcaattagtgca
aaagactttagcggaaaaacaataaaccgtgaagttgcaggccaaatgaataatctcaga
aagtggcaacaaagagtaagagtttcctcaccaagagaaagaagattagcaaatgtttta
gcaaaaatgggtgaaacatgtgaaggtctaaatctttcaaagaatgttttggaaacagca
tctatgatatacagaaacttggatggacatgttgatgtgaaaggaaaatcagtagttagc
ataacagctgctacaatttacatggcatgcaaacaatgtgatgtagtaagatcattagaa
gaaatttgccgaggaatttgtccagcaaaagacgttaaatcaaaaacaaaacttgcagct
agatactatagaaccatggtaatggaaatgggacaactacatgccccagttgtaaccatg
gacaaatacatctcaaagatagcaaacatgacacagactgaggttagagttgaaagacta
gccttagaaattgcagaaaaaaccaaagacagcagtattgctgatggtaaggctccaaac
gggattgccgcagcatatctgtatgtagcatcggttttacttggacaaaacgttctacaa
agagacgtttcaagtattgcaggagtcacagaagtaactatcagaaatagatgtaaagaa
attctaacgtgctataaactcaaaattactttgagaccatctctggccaactaa
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