KEGG   Candidatus Nitrosopumilus sediminis: NSED_03640
Entry
NSED_03640        CDS       T02303                                 
Name
(GenBank) flap endonuclease-1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
nir  Candidatus Nitrosopumilus sediminis
Pathway
nir03030  DNA replication
nir03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:nir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NSED_03640
   03410 Base excision repair
    NSED_03640
   03450 Non-homologous end-joining
    NSED_03640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nir03032]
    NSED_03640
   03400 DNA repair and recombination proteins [BR:nir03400]
    NSED_03640
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nir04147]
    NSED_03640
DNA replication proteins [BR:nir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NSED_03640
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NSED_03640
DNA repair and recombination proteins [BR:nir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NSED_03640
Exosome [BR:nir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   NSED_03640
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AFS82534
UniProt: K0BAL9
LinkDB
Position
complement(607036..608058)
AA seq 340 aa
MGLNLKDLVIREKTTLEAFSNRVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSG
LLYRNVNFLSLGIKPVYVFDGRPPSLKTAEIERRKQIKKDATVKYEKAVAAGNMEDARKF
AQQTTSMKDGMVKESKQFLTYLGIPYIEAPSEGEATAAHLTNTGQAYASASQDYDSILCG
AKRLVRNFTTSGRRKIPNRNTYIDILPEIIETQKTLDEIGLTREELIDVGILIGTDFNPN
GFERIGPKTAMKLIKQYSRLEDIPQIQEQLQEIDFKQIRNIFLNPEVAEVDEIVFNEVDY
EGVTNYLVKERSFSEDRIQSTLNRLKKALEKKSQNLDQWF
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggggcttaacctaaaagatttggtaatcagagagaaaactacacttgaggcattttca
aacagggtaattgcgattgatgcatacaatgcaatttaccagtttttagcaagcatcaga
ggaccagacggattacaattatcagattcagaagggagaatcaccagtcatcttagcggt
ttactttacagaaatgtaaattttttatctctagggataaagccagtctatgtttttgat
ggaaggccaccatctctgaagacagcagaaattgagcgcagaaaacaaatcaaaaaggat
gcgacagtgaaatacgaaaaagcagtagcagcaggaaatatggaggatgcacgaaaattt
gcgcaacaaacaaccagcatgaaagatggaatggtaaaagaatcaaaacagtttctaaca
tatttaggaattccatatattgaagccccatcagaaggagaggcaactgcagctcattta
acaaatacaggacaagcatatgcttctgcaagtcaagactatgattcaattttatgcgga
gcaaagagactagtaagaaattttacaacaagtggaagacgaaagattccaaatagaaat
acatacatcgacatacttccagaaattattgaaacccaaaagacattagatgaaattgga
ttgacacgagaagaattaatcgatgttggaattttgattgggactgattttaatccaaat
ggttttgaaagaattggtccaaaaacagcaatgaagttaatcaaacagtattcaagattg
gaagacattccacaaattcaagagcaattacaagagattgatttcaaacaaatccgaaat
atattcttaaatccagaagtagcagaagtggatgaaattgtgtttaatgaagtagactat
gaaggagtaacaaattacctagtaaaagagaggagtttttctgaagacaggattcaatca
actttaaatcgattaaaaaaagctctagagaagaagagtcaaaatctcgatcaatggttc
taa

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