Candidatus Nitrosopumilus sediminis: NSED_04950
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Entry
NSED_04950 CDS
T02303
Name
(GenBank) peptide chain release factor 1
KO
K03265
peptide chain release factor subunit 1
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NSED_04950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nir03019
]
NSED_04950
03012 Translation factors [BR:
nir03012
]
NSED_04950
Messenger RNA biogenesis [BR:
nir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
NSED_04950
Translation factors [BR:
nir03012
]
Eukaryotic type
Release factors
NSED_04950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_1
eRF1_3
acVLRF1
baeRF_family10
LRR_13
HypA
Motif
Other DBs
NCBI-ProteinID:
AFS82794
UniProt:
K0BBB5
LinkDB
All DBs
Position
802218..803498
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AA seq
426 aa
AA seq
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MPKIDVEKQDSVKIYKIRKTLEELSKKSGRGTELITVYIPKGKQLHEIISSLQQEQGTAD
NIKSDLTRSHVVDSLGKVIQRLKLYKKTPPKGLVMFCGALPPDEGGPLGSEVVKVWEIDP
PKDLNQYLYRCDDHFHVDILKDMLKDDNLIGFLAIDAKDAGWGLLHGDKIEVLSQTGSGV
AGKHRQGGQSAKRFQKLREMELSYFYNRVAQTTREYFIDIYPVKGLIISGPGPTKEDFIN
GNYLEYRLQNNIISTIDSSYSGAEGIREAFAKSSDILGNFRMVEEKKMVEDLFREINSNT
GKGSYGLQEVIEYLKNNVVQTLLITDNTNLHRVEGKCKRCKHTQEEIVERPLVIPKKTEF
ANNPCPGCKSMEVEVNEQDIVDYLEILASKTGTQLEVISGSAEHGNMLSSLGKVGAILRY
NPGHAK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagattgacgttgaaaaacaagattcagtaaaaatctacaaaattcgaaaaaca
ctagaagagttatctaaaaaatcaggcagaggtactgaattgattaccgtgtatattcca
aaaggaaaacaattacacgaaattatcagttccctacagcaagaacagggaactgctgat
aacataaaatcagatttaacaagatcacacgtagttgattctttgggaaaagttatccag
agattaaagctctacaaaaaaaccccaccaaaaggactagtaatgttttgtggagcattg
cctccagatgagggaggacctctaggaagtgaagttgtcaaggtttgggaaatagatcca
ccaaaagatttgaatcagtacctgtatcgatgtgatgatcatttccacgtagacattcta
aaagacatgttgaaggacgataatctcataggatttttagcaattgatgcaaaagatgca
ggttggggattactgcatggagataaaattgaggtgctatcacaaactggttcaggtgtt
gcaggaaaacacagacaaggagggcaatctgcaaagagatttcagaaactacgagaaatg
gaattgagttatttctataacagagttgcacagactacacgtgaatattttatcgatatt
tatccagtcaaaggattaatcatatcggggccaggacctacaaaagaagatttcatcaac
ggtaattatctagaatacagattacaaaataatattatcagcacaattgattcatcgtat
tcgggagctgaaggtattcgggaagcttttgcaaaatcatcagatatcctaggcaacttc
agaatggttgaggagaaaaaaatggtagaagatttgttcagagagatcaattccaataca
ggaaaaggatcatatggtttacaggaagtaattgaatatttgaaaaataatgttgttcaa
actttgctgatcacggacaacaccaatctccacagagttgaaggaaaatgcaaaagatgc
aaacacacccaagaagaaattgttgaaagacctttagtaattcctaaaaaaacagaattt
gccaacaatccatgtccaggatgtaaatcaatggaggtagaagttaatgaacaagacatc
gtagactatttggagatattagcatcaaaaacaggaactcaattggaagtcatttcagga
agcgcagaacatggaaacatgctttctagtttaggaaaagtgggagcaatattgagatat
aatccagggcatgctaaataa
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