Candidatus Nitrosopumilus sediminis: NSED_05330
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Entry
NSED_05330 CDS
T02303
Name
(GenBank) transcriptional regulator TrmB
KO
K23356
HTH-type transcriptional regulator, sugar sensing transcriptional regulator
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nir03000
]
NSED_05330
Transcription factors [BR:
nir03000
]
Prokaryotic type
Helix-turn-helix
Other families
NSED_05330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrmB
HTH_IclR
MarR_2
HTH_5
HTH_9
MarR
HTH_24
DUF2250
HTH_20
Rrf2
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
AFS82870
UniProt:
K0BCX8
LinkDB
All DBs
Position
876449..877297
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AA seq
282 aa
AA seq
DB search
MEISVNTMQLGTYPVDKNNFEQVRDALVSFGLTPNQSKVFFYLGKIGAKTASDIAKAVNI
PRSETYHLLTALQNKGIVEASFQHPIQFTALSIKNAVNLLISTETERLNKLKKAGPELEE
IWEKIPGATLNEEEEGEEKFKVLQGGNQVNSKIFDMILNAKKECRILGSEKDFIKFYHAN
FLDALEEQKIDYKLLTSITKKSNGIFDEIDKTKIKKLCSSVKENLCFLIKDDDEVLFFIK
NEGNNKEMRAIWTNSETIIYSKALLFNSIWSKTELGGEVFNE
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggaaattagtgtaaacactatgcagttaggaacatacccagtagataagaataatttt
gaacaagtacgggatgcactagtttcatttggattaacaccaaaccaaagcaaggtattt
ttttatctaggcaagataggtgcaaaaacagcatcagatattgcaaaggctgtcaacata
ccaagaagtgagacataccacttactaacggccttacaaaacaaaggtatcgtagaagca
tcatttcagcatccaattcaatttacagcattgagtatcaaaaacgcagtaaatcttctt
atcagcacagaaactgagcgtctaaacaaactcaaaaaagcaggaccagaattagaagaa
atctgggaaaaaattccaggagccacattaaatgaagaggaagaaggagaagagaaattc
aaagtattgcaaggaggcaatcaagtgaatagtaaaatttttgatatgattcttaatgct
aaaaaagagtgcaggattttaggttcagaaaaagatttcattaaattttatcatgcaaac
tttctagatgcgttagaagagcaaaaaatagattacaaattattaacatcaataacaaaa
aaatcaaatggaatatttgatgaaatagataaaacaaagatcaaaaaactttgttcatca
gtcaaagaaaacttgtgctttttgataaaggacgatgacgaagtgttattctttattaaa
aatgagggaaacaataaagagatgagagccatatggacaaactctgaaacaataatctat
tccaaggcattgttgttcaatagcatatggtcaaaaacagaattaggcggagaggtattc
aatgagtaa
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