Candidatus Nitrosopumilus sediminis: NSED_05650
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Entry
NSED_05650 CDS
T02303
Name
(GenBank) transcription factor TFIIB cyclin-related protein
KO
K03124
transcription initiation factor TFIIB
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NSED_05650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nir03021
]
NSED_05650
Transcription machinery [BR:
nir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NSED_05650
Prokaryotic type
Archaeal type
TFB
NSED_05650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
Zn_Ribbon_TF
Cyclin_N
RB_B
HTH_3
Zn_ribbon_tTFIIB
ORC6_2nd
Motif
Other DBs
NCBI-ProteinID:
AFS82932
UniProt:
K0BD10
LinkDB
All DBs
Position
930928..931848
Genome browser
AA seq
306 aa
AA seq
DB search
MLAELIHQKNCKKNKIITDTYTGEIACSNCGVVSLEKAVDTSTEAIGLTGEEYQTNSRVG
MKTSLKMADRGLSTIMESQDKDATGKSLSNENKRMFYRLRMWDRNSRSAISIKSFQKAFT
LLDGISSKLALPESVVEETAYLFRKIAAKKILAGRSTASMLCATVYITCRLTDTPRTLQD
IANAGNIKKKNLQRIYRFLVKELDLYPEAYSPIEFVNRVSKAVQISEKTERLAFKILHIS
MKEKVSTSKNPMAMVAAAINLASLMNKEKVTQLKIAKISGISAVTIRNITNEIKEKVGGE
INGKNL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgttggcggaattaatacatcaaaaaaattgtaaaaaaaataaaataattactgataca
tacacgggggaaatagcatgtagtaattgcggggtagtttcactagaaaaagcagtggat
acaagtacagaagcaataggtctcaccggagaagaatatcaaactaattccagagtagga
atgaaaacatcattgaagatggcagatagaggattatctacaataatggaatctcaagat
aaagatgcgacaggaaaatcactatcaaatgaaaataaaagaatgttttatcgtttgagg
atgtgggataggaatagtcgttcggcaatatcaattaaatcatttcagaaagcatttaca
ttgctagatggaattagttcaaaattagcattacctgaatcagtagttgaggaaacggct
tatttgtttagaaaaattgcagcaaaaaaaatactagcaggaagatccaccgcatctatg
ttatgtgcaacagtttacatcacatgtagattaacagacacgccaagaacgttacaggat
atagcaaatgcaggaaacataaagaagaaaaatttgcaaagaatttacagatttcttgta
aaagaattggatttgtatccagaagcttacagtccaatcgaatttgtcaatagggtgtcc
aaggcagttcaaatttcagaaaaaactgaaagattggcatttaaaatattgcatatatcc
atgaaagaaaaagtatctacaagtaaaaatccaatggcaatggtagcggccgccattaat
ttagcatcattgatgaataaagaaaaagtcactcagttgaaaattgcaaaaatttctgga
ataagtgcagttacaatcagaaacataacaaatgaaattaaagaaaaagtaggaggtgaa
attaatgggaagaacttgtag
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