Candidatus Nitrosopumilus sediminis: NSED_05695
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Entry
NSED_05695 CDS
T02303
Name
(GenBank) transcription factor TFIIB cyclin-related protein
KO
K03124
transcription initiation factor TFIIB
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NSED_05695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nir03021
]
NSED_05695
Transcription machinery [BR:
nir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NSED_05695
Prokaryotic type
Archaeal type
TFB
NSED_05695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
BRF2-like_C_cyclin_rpt
Zn_ribbon_tTFIIB
Ribosomal_S27e
Zn_ribbon_IS1595
Lar_restr_allev
HscB_4_cys
RB_B
HMG_CoA_synt_C
A2L_zn_ribbon
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AFS82941
UniProt:
K0BF80
LinkDB
All DBs
Position
937698..938609
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AA seq
303 aa
AA seq
DB search
MLKNQMIAGPKCPSCGDKKMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNEEGNKA
RTGAGTSLTMHDMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSSADRNLR
QALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPR
TLDDIAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAIAI
LNQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIRNRCSGLRKM
LND
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaaatcaaatgattgcagggccaaaatgtccatcctgtggagataaaaaaatg
gttacagaccaaaccacgggagaactattctgtagtaaatgtggattggttgtaacagac
aagattgcagatacaggtgccgagtggcgttccttttcaaatgaagaagggaataaagca
agaacaggagctggaacatcccttacaatgcatgacatggggctatctacagttattggt
gcagcaaacaaagatgcaactggaaaacccctatctgcaagtgtaaagagttcaattgaa
agattaagaacatgggatagtagaagtcaagcacattcttctgcagatagaaatttgagg
caagcacttaatgaaatggacaaactaaaagacaaacttgctttaacggatgcagtaatt
gagaaagcagcttacatttacagaaaagctatggaaaaaaaattagtcagaggtcgctca
attcaaggattggttgcagcatgtctttatgcatcatgtagaaatacagaaacaccaaga
acattggacgatattgcaaagggaataaacattagaagaaaagatgtggcaagatgttat
agattaatttttagagaattagaattaaagatgccagttgttgatcctgtaaaaggagta
tcaagaattgcaagcattgcagagctaagtgaaaaaagcaaacgtaaagcaatagcaatt
cttaatcaagcaaaagagataggcatggttgcaggaaaagacccaatgggtattgcagca
gctgcgctttatcttgcatgtattagtacaggtgaagtcaaatcacaaaaagacatctca
attgcatcaggagttaccgaagtgacaattaggaatagatgttcaggattaagaaaaatg
ctcaatgactag
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