Candidatus Nitrosopumilus sediminis: NSED_06565
Help
Entry
NSED_06565 CDS
T02303
Name
(GenBank) 2-alkenal reductase
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NSED_06565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nir03000
]
NSED_06565
03021 Transcription machinery [BR:
nir03021
]
NSED_06565
Transcription factors [BR:
nir03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
NSED_06565
Transcription machinery [BR:
nir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
NSED_06565
RNA polymerase III system
TFIIIB
NSED_06565
RNA polymerase I system
SL1/TIF-1B
NSED_06565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-ProteinID:
AFS83113
UniProt:
K0BA49
LinkDB
All DBs
Position
complement(1098382..1098942)
Genome browser
AA seq
186 aa
AA seq
DB search
MTQTKPIIAIVNVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFG
SGKMVCTGAKSQELAETAVFEVVKILRKGKIKIKNDPIVSIQNIVSSINLGGKVNLEQAA
RTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDVHRSVNQIHALLEEK
GLMVYD
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaacaaaaccaataattgcaattgtcaatgttgtagcttctgcaacaattgaa
caaaaattagatttagtagatattacaaaaaaattccctgctgttgaatatcatccagaa
caattccctggcgctgttttccgactgaaaaatcctaaaactgcaacattactttttggc
tcaggaaagatggtttgcacaggtgcaaaatctcaagaattggcagaaactgccgtattt
gaagtagttaagatattacgaaaaggaaaaatcaaaatcaaaaatgaccctatagtctca
atacaaaatatcgtctcttccattaatcttggaggcaaagtaaatttggaacaagccgct
agaactcttcctagaagcatgtatgagccagaacaattccctggactaattcataggatg
cttgatccaaaaactgtaattctcatatttgcatcaggaaaattagtttgtgtaggagca
aaactcgaaaaagatgttcatcgttctgtaaaccaaatccatgctttattggaagaaaaa
ggactaatggtttacgattag
DBGET
integrated database retrieval system
