Candidatus Nitrosopumilus sediminis: NSED_06825
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Entry
NSED_06825 CDS
T02303
Name
(GenBank) tRNA pseudouridine synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nir03016
]
NSED_06825
Enzymes [BR:
nir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
NSED_06825
Transfer RNA biogenesis [BR:
nir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NSED_06825
Prokaryotic type
NSED_06825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
HOOK_N
Motif
Other DBs
NCBI-ProteinID:
AFS83163
UniProt:
K0BA96
LinkDB
All DBs
Position
complement(1141551..1142747)
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AA seq
398 aa
AA seq
DB search
MIPEIDCQIGISVYSTKFPGIGGRIRVKPEDFQVTELISEKIKNSINDQNGYAVYKLKKK
KIDTNHALSGIFRQKGIRLKSLGLKDASAITEQFVCSGNKGKSIESFSSDKYSLEKIGFV
KKPLSKKDMVGNHFKLKISDCKNDLESFVEFDKILNFYGYQRFGSKRPVTHLIGKAILQM
DFDRAVDLILSFTSSYDSKENNEIREKLSDRENYQQYFDQVPVQMDIERIVLKEMIEHGE
SVRAIRAIPISLRRFYIQAYQSFIFNQSLSAAFLDGENLFEAQSGDVCFDHNGIIGKYVK
GMDQNLALPFVGYSYYKKTRFDFQISKILKQEEISPKDFFIKEMQEASSEGGFRQAAIHC
TDYSSHGNVVEFSLSRGSFATILLREIMKPDDPILAGF
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgatacctgagatagattgccaaataggcatttctgtatatagcacaaaatttcctggt
attggtggaagaattagagttaaacctgaagattttcaagtgactgaattaatttctgaa
aaaataaaaaattctatcaatgatcaaaatggttatgccgtatacaaattaaaaaagaaa
aaaattgacacgaatcatgctttatctggaatttttagacaaaaaggtattcgtcttaaa
tctcttggattaaaagatgcatcagctataacagaacaatttgtatgctctggaaacaaa
ggaaaatcaatagaaagcttttccagtgacaaatactcgcttgaaaaaattggatttgta
aaaaaacctctatcaaaaaaggatatggttggaaatcatttcaaattaaaaatttctgat
tgtaaaaatgacttggaatcttttgtagaatttgacaaaattctcaatttttatggttat
cagcgttttggttcaaaaagacctgtaactcatcttattggcaaggcaatactgcaaatg
gattttgaccgtgctgtagacttgattttatcatttacttcctcctatgactctaaagaa
aataatgaaattcgtgaaaaattatctgatagggaaaactatcaacaatattttgatcaa
gttccagttcagatggatattgaaagaatagttctaaaagaaatgattgaacatggtgag
tctgtacgtgctattagagcaatccctatttctttaagacgtttttacattcaggcttac
caatcttttatctttaatcaatccctaagcgctgcatttttggatggcgaaaatcttttt
gaggcacagtctggtgatgtttgctttgatcataatgggatcattggaaaatatgtcaaa
ggaatggaccaaaatttagcattgccttttgttggttactcttattacaaaaaaacacga
tttgattttcagatctctaaaatattgaagcaggaagaaatttctccaaaagatttcttc
ataaaagaaatgcaagaagcaagtagtgaaggtggttttagacaagctgctattcactgt
acagattattcctcccacggaaatgtggtggaattttcactgtctagaggatcttttgca
acaattttgctcagagagattatgaaacctgatgatcctatccttgctggcttttga
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