Candidatus Nitrosopumilus sediminis: NSED_06975
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Entry
NSED_06975 CDS
T02303
Name
(GenBank) hypothetical protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nir03400
]
NSED_06975
DNA repair and recombination proteins [BR:
nir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
NSED_06975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF87
TrwB_AAD_bind
HAS-barrel
ABC_tran
DUF5594
Motif
Other DBs
NCBI-ProteinID:
AFS83193
UniProt:
K0BAC9
LinkDB
All DBs
Position
1166097..1167629
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AA seq
510 aa
AA seq
DB search
MSLGFVIGESKPTFVTALTSRALSVGEYIKISSDEGEILGLVEKSSVSSAAFTDVKNFDE
ASESTEIAELNKRDKTFTAHIGILGFLENLRRGQSIIPAIPPIPGTEITLPSKQDLEEIF
SPEKEGWVSIGSLLRNKSIDAKVNLDKIVSRHLGILAMTGMGKSNLVSLVTKQISKLKGT
VIIFDYHNDYTSLNIPRINVIDAKINPRLLDADQLSDVLEIRDSATVQQRVLRMAFSEQV
KKTKEFWKKLENEIDFIINSDDNKLKEIRSSAYRVQDIIEESQKRFEDILDPDMGDPISF
IKEGRANILNISELSEKQANVALAFYLQQLLKDRKDASIARHGKSKKERNYQFNSPIFVI
IEEAHVFIPKDHDTSAKYWAAKIAREGRKFGLGLGIVSQRPRSVDLNVLSQMGSFAIMKI
IQEDDQRQIASATESTSRELIAQLTSLNVGDAVLVGQWTNLPSLVHVDEVKEKIMGADQS
AINAWAKADKMKEIAVESTQGLVQKDLLLD
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttaggttttgtaattggagaatcaaaaccaacattcgtgacagcacttacttca
agagcgttatcagtaggagaatatatcaaaattagttcagacgagggagaaattttaggt
ttggtagaaaaatcttctgtatcaagtgcagcatttacagatgttaagaattttgatgaa
gcatcagaaagtacggaaattgcagaattaaacaaaagagacaagacatttacggcacat
attggaattttgggatttttagagaatctaagaagaggccagtcaatcatacctgcaatt
ccacccattccaggcacagaaatcactttaccaagcaaacaagatctagaagaaatattc
agtcctgaaaaggaaggatgggtaagcataggaagtcttttacgaaataaatcaatcgat
gcaaaagtgaatttagataaaattgtatcaaggcatttaggaattttagctatgaccggg
atgggtaaaagcaatttagtatctttggttacaaaacaaatttcaaaactaaaaggcact
gtaataatttttgattatcacaatgattacacaagcttgaatataccacgaattaatgta
attgatgcaaagataaatccaagattgttggatgcagaccaactctcagatgtgttagaa
attagagatagtgctaccgtacaacaaagagtgttaagaatggcattttcagaacaggtt
aaaaaaacaaaagagttttggaagaaattagaaaatgaaatagattttatcataaattca
gatgacaataaactcaaagaaatcagatcatcggcatacagagttcaggatattattgaa
gaatcacaaaaaagatttgaagatattttggatccagatatgggagatccaattagcttc
atcaaagaaggtcgtgcaaatattctaaatatttcagaattatcagaaaaacaagcaaat
gttgcattagcattttacttacaacaattactaaaagatagaaaagatgcaagtattgca
agacatggtaagagtaagaaagaaagaaactatcaattcaattcaccgatatttgtgatc
atagaagaagcacatgttttcattccaaaagatcatgatactagtgcaaaatattgggcc
gcaaaaattgcaagagagggaagaaagtttggattaggactaggaatagtatcccaaaga
ccacgaagcgtagacctgaacgtgcttagtcagatgggctcatttgcaatcatgaagata
attcaagaagacgatcagcgacaaattgcctcagcaacagagtctactagtcgtgaattg
atagcacaactgacatcattaaatgttggagatgcagtattggtaggacaatggaccaat
ctaccatcactagttcatgtagacgaagtaaaagagaagattatgggagcagatcaaagt
gcgattaatgcatgggcaaaagcggataaaatgaaagagattgcagtagaatcaacgcaa
gggttagtacagaaagatttgttattagactaa
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