Candidatus Nitrosopumilus sediminis: NSED_07335
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Entry
NSED_07335 CDS
T02303
Name
(GenBank) transcription factor TFIIB cyclin-related protein
KO
K03124
transcription initiation factor TFIIB
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NSED_07335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nir03021
]
NSED_07335
Transcription machinery [BR:
nir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NSED_07335
Prokaryotic type
Archaeal type
TFB
NSED_07335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
BRF2-like_C_cyclin_rpt
Baculo_ME53
Zn_ribbon_tTFIIB
DUF6671
DZR
Cyclin_N
Motif
Other DBs
NCBI-ProteinID:
AFS83261
UniProt:
K0BG22
LinkDB
All DBs
Position
complement(1230485..1231414)
Genome browser
AA seq
309 aa
AA seq
DB search
MTTIQIIKKTKLFCDYCHASKFVTDQITGEIICSSCGFVISENAEDRGLERRLISNTSDT
ARTGPGLTLKMHDKGLNTRIGVQNKDSVGKPLSAKTTQMFGRLRKWDSRSQTKNSAEKNL
RFALIEFDKVQSKLGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHH
RTLTEIAIQFVIKRKEIARAYRILFRELGFTVSVVDPIKSINKIASKIGSSEKVIRKATQ
ILTAAQDAEIIAGKNPEIMAAAAIYAACVITGELKSQIEIAEAANTSTVSIRNRIQEFKT
KLDLFSTMI
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
ttgaccacaatacagataattaaaaaaacaaagctattttgtgattattgccatgcttca
aaatttgtaactgatcaaatcactggtgaaatcatttgctcaagttgcggattcgttatt
tcagaaaatgccgaagatagaggattggagcgcagactgatttcaaatacgtctgatact
gctagaacaggtcctggactgacactcaaaatgcatgacaagggattgaatacgcgaata
ggagtgcaaaataaggattcggttggaaaaccactttcagcgaaaacaacccagatgttt
ggcagattgcgaaaatgggatagtagatcacagacaaaaaactctgcagagaagaatctc
agatttgccctcatagaatttgacaaagtacaatcaaaattaggcctatcagataccgta
gttgaacgagcatctcttttttacagaaaggcaatagagagaaaccttattcgaggcaga
actgtgaaatctattgcagcagcgtgcttgtatgcttcatgtcgagatttagaacaccat
agaactctaacggaaatcgcaattcaatttgtaatcaaaagaaaagagattgcgcgagca
taccgaatattgtttagagaattaggatttactgtatctgtagttgatccaataaaatcg
attaataaaattgcaagtaagataggctcatctgaaaaagtaattcgtaaagcaacacaa
attttgactgcagcccaagatgcagaaattattgctggtaaaaatccagagatcatggca
gctgccgcaatttatgcagcatgtgtaattacaggagaattaaaatctcaaatagaaatt
gcagaagctgcaaacactagcacggtttctataagaaatagaatacaggaatttaaaaca
aaattagatttgttttctacaatgatttaa
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