Candidatus Nitrosopumilus sediminis: NSED_07985
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Entry
NSED_07985 CDS
T02303
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nir03016
]
NSED_07985
Enzymes [BR:
nir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NSED_07985
Transfer RNA biogenesis [BR:
nir03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NSED_07985
Prokaryotic type
tRNA splicing ligases
NSED_07985
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
GAPS4b_N
DUF2774
DraIII
Motif
Other DBs
NCBI-ProteinID:
AFS83389
UniProt:
K0BD96
LinkDB
All DBs
Position
complement(1338148..1339596)
Genome browser
AA seq
482 aa
AA seq
DB search
MSSAVPRKIGENQYQIDADSNLGMKVPVRIYADEALMQKMLSDRTIMQARNVASIPGIVG
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLTEDIVRSKLKE
LVTDLFSSIPSGVGSKGAVKLTHSELDEVLVKGVNWAIDHGYGSSDDADVCEENGQIQNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAAKRMGIEEGTITTLIHCGSR
GFGHQVCSDYLRVSEQAMEKYGINLPDRELACVPNNSEEGESYRKAMFSALNFAWSNRQM
LTHWTRNSFQRVFNQSESDLEMKLVYDVAHNIAKVEKHKVDGKDRNLVVHRKGATRAFPA
NRSEIPLKYRDLGQPVLVPGSMGTASWILLGQPNSMNLSFGSTAHGAGRTMSRSKARKNF
TEDNVKKSLNEKGIFIKALTRDGVVEETPQAYKDVDSVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttctgctgtgccaagaaaaattggagaaaatcaatatcaaatcgatgctgattct
aatcttggaatgaaagttcctgtgagaatttatgctgatgaggcattgatgcaaaaaatg
ttatctgatagaacaatcatgcaggcacgaaatgtggcttccatacctggtattgttggt
catagtgttgttttacctgatgggcatgagggttatggttttcctgtaggtggggtagct
gcaatggatgctgaagagggaatgattagtcctggaggtgttggatatgatattaattgt
ggagttcgattactccgttcaaatttaacagaagatatagttcgttcaaaactaaaagaa
cttgtcactgatcttttcagctctattccttcaggtgttggttctaaaggcgcagttaaa
ctaactcattcagaactagatgaagttttagtaaaaggagttaattgggcaattgatcac
ggttatggttcatctgatgacgctgatgtttgtgaagaaaacggacagattcaaaatgct
gatcctaacaaagtttctgataaagcaagaaaaagaggtgcacctcagcttggaagttta
ggttctggaaatcattttcttgaggtacaaaaagtttcagagatacatgatgaggaagca
gcaaagagaatggggattgaagaaggaacaatcacaactttaattcattgtggttctaga
ggatttggtcatcaagtatgcagtgattatcttagagtatcagagcaagcaatggaaaaa
tatggtatcaatttaccagatagagaacttgcatgtgttccaaataactctgaagaagga
gaatcttatagaaaagcaatgttttcagcattaaattttgcatggagtaatagacaaatg
ctaactcactggactaggaattcatttcaacgtgtgtttaatcaatctgaatctgatctt
gagatgaaattagtttatgatgttgctcacaatattgccaaagtagaaaaacacaaagtt
gatggaaaagatcgtaacttggttgttcacagaaaaggagcaacaagagcatttcctgca
aatcgtagtgaaattcctttgaaatatcgagatttaggtcagcctgtattggttcctggt
tctatgggaacagcaagctggattttacttggacagccaaattccatgaatttgagtttc
ggctcaactgctcatggtgctggtagaaccatgtccagatctaaggctagaaaaaacttt
accgaagacaatgtaaaaaaatccctcaatgagaagggcatatttatcaaagcattaacc
cgagatggggttgtggaagaaacccctcaagcctacaaagatgtcgattctgtagttaac
gtatctcataatctgggaattgccacaaaagttgcaaaattagtgcctattggtgtgata
aaaggttga
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