Candidatus Nitrosopumilus sediminis: NSED_08300
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Entry
NSED_08300 CDS
T02303
Name
(GenBank) phosphoesterase DHHA1
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03410
Base excision repair
nir03430
Mismatch repair
nir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NSED_08300
03430 Mismatch repair
NSED_08300
03440 Homologous recombination
NSED_08300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nir03400
]
NSED_08300
DNA repair and recombination proteins [BR:
nir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NSED_08300
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NSED_08300
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NSED_08300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AFS83452
UniProt:
K0BEJ8
LinkDB
All DBs
Position
1387521..1388942
Genome browser
AA seq
473 aa
AA seq
DB search
MTKSLDESLSYFKDKILDCIKSKKSISVTTHIDCDGLTSGSIITKALIRAGANCTVRTSK
EFSKNVLESFKTDSRDFHIVTDLGGGFANELDKTLGDNWVVLDHHQIPDNELDNQNVINS
WKYGIDGGVDICAGGMAYLASAALDERNSDLSAIAIVSALGDRQDQGERKSFTGKNFEIA
NIAKEQGLVDIDLDLLLVGRETRPLADALAFTSQPFIEGLTWNRDACLSILNSSGVNLKE
EGRWRVPAELNEEEKRLVIEAITKFTSGKNATEIMSELIGYTYTFPREDNRSFLRDGREF
STMLNSCGRINRSGVGMAVCMGDRNKILREAETILIDYRKMIREYMNILSNERWRISESE
TCIMVNGEDIVPETMTGTISSLIAGSPKNSGKIIILRTKAEENTIKFSSRKSFGCTSDIN
LSEIMRTGAEKFDGIGGGHNAAAGAKITKDKLDEFLNYLEVNVVNVPSSSNSQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatcacttgatgaatcactttcttatttcaaagataaaattttagattgtata
aaatcaaaaaaatcgatttccgttacaactcatatagattgtgatggattaacatcgggg
agtattatcactaaagctctaatcagagcaggggcaaactgcacagttagaacatcaaaa
gaatttagtaaaaatgtcctagagtctttcaaaacagattccagagattttcatatagta
actgatctaggagggggttttgcaaatgaattagataaaacattaggagataattgggtt
gttttagatcatcatcaaatcccagataacgaattagataatcaaaatgtaatcaattca
tggaaatatggaatcgatggcggagtagatatctgtgcaggaggaatggcgtatttggca
tcagctgcactagatgaaagaaattcagatttatctgcaattgctattgtttcagctttg
ggagacagacaagaccaaggagaaagaaagtcatttacaggcaaaaatttcgagattgca
aatattgccaaagagcaaggattggtagatattgatttagatttattgttggtaggaagg
gaaacaaggccacttgctgatgctttagcatttacctctcagccatttattgaaggacta
acctggaatagggatgcatgtctctcaatcctcaattcatcaggagtcaatctcaaagaa
gagggaagatggagagtgccagcagaactaaatgaggaagaaaaaagactagtgattgaa
gcaattacaaaatttacttcaggtaaaaatgcaactgaaataatgtcagaattaattgga
tatacctatacatttccaagagaagataacaggagtttcttacgggatgggagagagttt
tcaactatgctcaattcatgtggaagaattaatcgttcaggtgttggaatggcagtttgt
atgggagatagaaataagattctaagagaagctgaaacgattctaatagattatagaaaa
atgattagagaatacatgaatattttatccaatgaaagatggagaatttcagaaagtgag
acatgtatcatggtaaatggtgaagacattgttccagaaacaatgacaggcaccatttca
tcattaatagcaggatcacctaaaaactcaggaaaaatcataatattaagaaccaaggcc
gaagaaaatactatcaagttttcatcaagaaaatcatttgggtgtacatccgatatcaat
ctaagtgaaataatgagaactggtgctgagaaatttgatggtattggtggaggtcataat
gcagctgctggagcaaaaataactaaagacaaattggatgagtttcttaactatttagaa
gtaaatgtcgttaacgtgccaagttcaagtaattctcaataa
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