Candidatus Nitrosopumilus sediminis: NSED_08465
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Entry
NSED_08465 CDS
T02303
Name
(GenBank) HhH-GPD family protein
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NSED_08465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nir03400
]
NSED_08465
Enzymes [BR:
nir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NSED_08465
DNA repair and recombination proteins [BR:
nir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NSED_08465
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AFS83485
UniProt:
K0BEL8
LinkDB
All DBs
Position
1417997..1418857
Genome browser
AA seq
286 aa
AA seq
DB search
MKKLLCKMQNCVINVDSSINSGQVFLWKKNNANWYGVNGQDILKITNSGDIKSYQNDKTD
FFRKKDNIEKIIKSISKDDVTKKAIKQYPGLRVFEQDPFQCLISFIVSSNSNIQKIKNSL
EKMSKRFGIKTEFDDQEFFLFPKPEKLAKASINEIKSCGVGYRANFIKEAANRTALKKID
FEYLKKCSYQEAKKEICQIPGVGNKVADCIMLFSLNKLESFPLDRWMIRILEKYYSDKFQ
LETKTITEKQYGILHEKIVNHFGPFAGYAQQFLFKMERENYQKKWL
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaattactgtgtaaaatgcagaattgtgtcataaatgtggatagttcgataaat
agcggtcaggtatttctatggaaaaaaaataatgcaaattggtatggagtaaacggtcaa
gatattctaaaaataactaattctggagacataaaatcatatcaaaatgataagacagat
ttttttcgaaaaaaagacaatattgaaaaaattattaaatcaatttcaaaagatgacgtt
acaaaaaaagctataaagcaatatccagggttaagagtatttgaacaagatccctttcaa
tgtttaatttcatttattgtctcatcaaactccaatattcaaaaaattaaaaatagttta
gaaaaaatgtcaaaaaggtttggtattaaaacagaatttgatgatcaagagtttttttta
tttcccaaaccagaaaaacttgcaaaggcatcaataaatgaaataaaaagttgcggggta
ggataccgtgctaattttatcaaagaagcggcaaacagaacagcgttgaagaagattgat
tttgaatacttgaaaaaatgcagctatcaagaagctaaaaaagagatttgccaaattcca
ggagtgggaaacaaagttgcagattgcattatgttattttcattaaacaaattagaatca
tttccattagatagatggatgatcagaattctagagaaatattattcagataaatttcaa
cttgaaactaaaacaattacagaaaaacaatatggaattcttcatgaaaaaatcgttaat
cattttggtccctttgcaggatatgcacaacaatttctctttaagatggaaagagaaaac
tatcaaaaaaagtggctgtaa
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