Candidatus Nitrosopumilus sediminis: NSED_08700
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Entry
NSED_08700 CDS
T02303
Name
(GenBank) transcription factor TFIIE subunit alpha
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NSED_08700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nir03021
]
NSED_08700
Transcription machinery [BR:
nir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
NSED_08700
Prokaryotic type
Archaeal type
TFE
NSED_08700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Sushi_2
TrmB
Sigma70_r3
DUF7086
zf-C3HC
zf_CopZ
EDR4-like_1st
Motif
Other DBs
NCBI-ProteinID:
AFS83532
UniProt:
K0BEQ2
LinkDB
All DBs
Position
1467552..1468067
Genome browser
AA seq
171 aa
AA seq
DB search
MVDKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGK
SLITGIRVKDERKGWFVYRWRTRREEVEHFIENQKKKIEERLQQRLDYENASDFYHCGNE
DCPRVTFENALDGMFKCPSCQNVLNLKKNDKSKKAYQKKIDEIKKDMQQTF
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
ttggtagacaaatacgaagatccttttgtaagaattgcttcaatgattgggggagacgaa
tacctcaaagtagcaagatcccttctaaaagctgaagatgctactgatgaagaaattgct
agttctacaggtcttagaatcaacatggtacgaaaagtattgtatgatctatttggaaaa
tccctcatcacaggaattagagtcaaagatgaacgaaaaggatggtttgtctatagatgg
aggactaggagagaagaagtcgaacattttattgaaaatcaaaagaagaagattgaggaa
agattacaacaaagattagattatgaaaacgcttcagatttctatcattgtggtaatgaa
gattgtcctagggtgacatttgaaaatgctcttgatggaatgttcaaatgcccatcatgt
caaaatgttttgaacctaaaaaagaatgataaatctaaaaaagcatatcagaaaaaaatt
gatgaaatcaaaaaagacatgcaacaaactttttga
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