Nitratiruptor sp. SB155-2: NIS_0268
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Entry
NIS_0268 CDS
T00565
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIS_0268 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nis03021
]
NIS_0268 (rpoB)
03400 DNA repair and recombination proteins [BR:
nis03400
]
NIS_0268 (rpoB)
Enzymes [BR:
nis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIS_0268 (rpoB)
Transcription machinery [BR:
nis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIS_0268 (rpoB)
DNA repair and recombination proteins [BR:
nis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIS_0268 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAF69382
UniProt:
A6Q1M3
LinkDB
All DBs
Position
253012..257172
Genome browser
AA seq
1386 aa
AA seq
DB search
MLNSLQSGSRLRVDFSKIPQELDVPNLLQLQKSSYENFLMADSKSRENSGIEKVFRSVFP
IHDPHNRISLEYAGSEIIKPKYTVRECMERGITYSVSLKMNIRLILWERDEKSGEKTGVK
DVKEQSIYVRDIPYMTDRTSFIINGVERVVVNQLHRSPGVIFKEEEASTSSGTMIHTAQI
IPDRGAWLYFEYDPKDILYVRINKRRKIPSTILFRALGYSKLDILKLFYPITKIIIKENK
FFIEFRPEDFIGRVEFDVRDENGNLIVEAGKRLTKKKAQKLIEEGVKYIEFPLDVLMDRH
LASPIIDQESGEVLYDTLTQLDEHKLKKILELGIDEFEIVNDIASGKDRAIINSFIADQE
SLKLLKQTEGIEDENDLAAIRIYKVMRPGEPVTKETAKAFIQQLFFDPERYDITRVGRMK
MNHKLGLDVPEYVTVLTSEDIIKTVQYLIKVKNGQGHIDDRDHLGNRRIRAIGELLANEL
HSGLVKMQKAIRDKMSTISGSLDELMPHDLINSKMITNTILEFFATGQLSQFMDQTNPLS
EITHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVN
ELGFIEAAYKVVKDGKITDEIVYLTAAQEEGKIIAPANTEIIDGNEIKGDYVEARKDGEI
ILVEKNKVELIDLTPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRTEAPIVGT
GMEKVVARDAWESIRARRSGVVEKIDSENIYILGEDENGAYIDHYRLQKNLRTNQNTCFT
QKPIVKKGQFVEAGQVITDGPNMDHAELALGKNMLVAFMPWNGYNFEDAIVVSERILRDD
EFTSVHIYEKEIEARELKHGVEEITRDIPNVKEEEIEHLDESGIVKIGTYVKPGMILVGK
VSPKGEVRPSPEERLLRAIFGEKAGHVVNKSLYCPQSMEGVVVDVKIFTKKGYDKDPRAI
KAYEEEKERLSKEHHDKLLMIDREEMLKIISLLSKEPLEKDAKIKDKEFKAGEKISKEEL
SQINRFALNALVKSYAPEVQKKYNAIKTHFQNEKRKLTEEHEEKLAILEKEDILPSGVVK
LVKVFIATKRKLKVGDKMAGRHGNKGIVSVIVPEIDMPYTKDGRIVDIVLNPLGVPSRMN
IGQILEVHLGLIGKKLGEQIQEIFEAKRADFVKELRQKMIEIADVAKLMNAKETIEKMSD
EELIEYARDWSKGVKFATPVFEGVTAEEFEKLYELAKMDLDGKTELYDGRTGEKFKERVT
VGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAHGAAHT
LKEMLTIKSDDVEGRVAAYKAITKGEPIPQPGIPETLFVLTKELQSLGIDVEILDEVKDD
EETGTN
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatagtttacaatccggaagcagacttcgtgtagatttctccaaaattccgcag
gaattggatgtacccaaccttttgcaactgcaaaagagtagttatgaaaacttcttgatg
gcagattcaaagagccgtgaaaacagcggtattgaaaaagttttcagatcagttttccca
atccacgaccctcataatagaatttctctagaatatgcaggtagtgaaatcataaaacca
aaatacactgttcgtgaatgtatggaacgaggcattacatatagtgtatctcttaaaatg
aatattcgtctcattctttgggagcgagatgaaaaaagtggtgagaaaactggtgtgaaa
gatgtcaaagagcaatccatctatgttcgtgacatcccgtatatgactgacaggacttct
ttcattatcaatggtgtagaaagagttgtcgttaatcagcttcacagaagccctggtgtt
atttttaaagaggaagaggcttctacgagcagtggtacgatgattcatactgcacaaatc
attcctgacaggggtgcatggctctattttgaatatgaccccaaagatatcctatatgtt
cgaatcaacaaacgaagaaaaataccatcaactattctttttagagcgcttggatatagc
aaactggacattttgaaactattttatcctattacaaaaatcatcatcaaagagaataaa
ttttttatcgagtttagacctgaagattttataggaagagttgaattcgatgtaagagat
gaaaacggaaatcttattgtagaagccggcaaacgacttacaaagaaaaaagcacaaaag
cttattgaagaaggtgtgaagtatatagagttcccacttgatgtattgatggataggcac
ttggcatctccaattattgatcaagaaagcggagaagtactgtacgatacattaacacaa
cttgatgaacataaactcaaaaagattttagaattagggattgatgagttcgaaatagtc
aatgatattgcaagcggaaaagatcgagccattatcaactccttcatagcagatcaagag
agcctgaagcttttgaaacaaacagaaggcattgaagatgaaaatgatttagcagccatt
cgtatttataaagttatgcgacctggagagcctgttacaaaagagaccgctaaagcattc
atacaacaactcttttttgatccagaacgatacgacatcacgcgagtcggtcgtatgaaa
atgaatcacaaactaggacttgatgttcctgaatatgtgactgttttgacaagtgaagat
attatcaaaacggtgcagtatctcattaaagtaaaaaatggtcagggtcatatcgatgac
agggaccatcttggaaacagacgaatccgagcgattggtgagcttttagcaaatgagctg
cattccggccttgtaaaaatgcaaaaggcgattcgggataaaatgtctactatcagtggt
agtcttgatgaattgatgccacacgatctcatcaactccaaaatgattaccaatacgatt
ttagagtttttcgcaactggacagctgtcacaatttatggaccaaacaaacccactgagt
gaaattacccataagcgaagactctcagccttgggtgaagggggacttgtcaaagagcga
gcgggatttgaagttcgtgacgttcacccaacacattacggacgaatatgtccaattgag
acaccagaaggtcagaatatcggtctgatcaatactctttcgacctatgcaaaagtgaat
gaactcggtttcattgaggccgcatacaaagtggtaaaagatggaaaaattaccgatgag
attgtatatctcactgcagcccaggaagaagggaaaattatcgctccagcaaataccgag
attatcgatggtaatgagatcaagggcgattatgtagaagcgagaaaagatggtgagatt
attttagtcgaaaaaaacaaagttgaactaatcgatttgacaccacgaatggtcgtaggt
gttgcagcaagcctcattccatttttggagcatgacgatgcgaacagggctctcatggga
tcaaacatgcagcgtcaggctgttccgcttctaagaacggaagctcctatagtcgggaca
ggaatggaaaaagttgttgccagggatgcatgggagtcgattcgagctagacgaagcggt
gttgtagagaagattgatagcgaaaatatctacattttaggtgaagatgagaatggggca
tatatcgaccattaccgcttgcaaaaaaatcttcgaacaaaccaaaacacatgttttacc
caaaaaccgatcgtcaaaaaaggacaattcgtagaagctggccaggtgattactgatggc
cctaatatggaccatgctgaacttgctcttggtaaaaatatgcttgttgcctttatgcca
tggaacggatacaactttgaggatgctatagttgtgagtgagcgaatcctcagagatgat
gagtttacttcagtacatatctatgaaaaagagatagaggcaagagaactcaagcatggc
gtagaagagattacgcgtgatattcccaatgttaaagaagaagagatcgagcatcttgat
gagagtggcattgtaaaaatcggtacctatgtcaaaccgggaatgattcttgttggtaaa
gtttctccaaaaggggaggttcgaccaagcccagaagaacggcttcttcgagcaattttc
ggggaaaaagcgggtcatgtggtcaataaatctctctactgcccgcaatcgatggaaggt
gttgtcgttgatgtaaaaatctttaccaaaaaggggtacgacaaagatccgcgtgcgatc
aaagcgtatgaagaggagaaagagagactctccaaagagcatcatgacaaacttttgatg
atcgatagagaagagatgctcaaaatcatctcgcttttatcaaaagagcctttggaaaaa
gatgcaaaaattaaagataaagagtttaaagcaggagagaaaatttcaaaagaggagtta
tcgcaaatcaaccgatttgcactcaacgctcttgtaaagtcatatgctcctgaagtacag
aagaaatacaatgccattaagacacattttcaaaatgagaagagaaaactgactgaagag
catgaagagaaacttgcaatcttagaaaaagaggatatcctaccaagtggtgtagtaaaa
ctagtaaaagtcttcatcgcaacaaaacgaaagctcaaagttggtgacaagatggctgga
cgacacggaaacaaaggtatcgtctccgtcatcgtcccagagatcgatatgccatacaca
aaagacggaagaatcgtcgatattgttctcaatcctcttggggttccatcacggatgaac
atcggacagatcctagaagttcatcttggccttatcggtaaaaaacttggtgagcagatt
caagagatttttgaagcgaaacgagccgattttgtcaaagagcttcgtcaaaaaatgatt
gaaatagcagatgttgcaaaactgatgaatgcaaaagagaccatcgagaagatgagcgac
gaggagctcatcgagtatgcaagggactggagcaaaggggtcaaatttgccactccagta
tttgaaggggtcactgccgaagagtttgaaaaactctatgagcttgcaaaaatggatctt
gatggtaagactgagctctatgatggacgaacgggtgagaaatttaaagagcgtgtaaca
gtaggatatatgtatatgctcaaacttcatcaccttgttgacgaaaaagtacacgcacga
agcacgggcccatactcactagttactcaacaacctgtaggtggtaaagcactctttgga
ggtcagcgatttggtgagatggaagtatgggctcttgaagcgcatggtgctgcccataca
ctcaaagagatgctcactattaaatcagacgatgtggaaggaagggtcgccgcttataaa
gcgattacaaaaggcgagcctattccacaaccaggtattcctgagacgctgtttgtcttg
acaaaagagttacaatcccttggaatcgacgtagaaatcttagatgaggtaaaagacgat
gaagaaactggtaccaattga
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