Nitratiruptor sp. SB155-2: NIS_0269
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Entry
NIS_0269 CDS
T00565
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIS_0269 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nis03021
]
NIS_0269 (rpoC)
03400 DNA repair and recombination proteins [BR:
nis03400
]
NIS_0269 (rpoC)
Enzymes [BR:
nis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIS_0269 (rpoC)
Transcription machinery [BR:
nis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIS_0269 (rpoC)
DNA repair and recombination proteins [BR:
nis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIS_0269 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
DUF6675
Motif
Other DBs
NCBI-ProteinID:
BAF69383
UniProt:
A6Q1M4
LinkDB
All DBs
Position
257150..261673
Genome browser
AA seq
1507 aa
AA seq
DB search
MKKLVPIEIGEEKRPKDIKAIQFRLASPEKILSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPIKDYECLCGKYKKMRYKGVVCEKCGVEVTTSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVKNPGEAYYDFEKKNPVKKYDVLNEEQYQQLVQH
FGDTGFDARMGGEVVKELLEEFDLVEAFEQLREEMKNTNSEAKRKTIVKRLKVIESFLNS
GNRPEWMMLTVVPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLLELDAPEI
IVRNEKRMLQEAVDALIDNGRRGNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPNLRMDQCGLPKLMALELFKPHLLAKLEEKGYATTLKQAKKMIEDRENVVWE
CLQEIVDEYPVLLNRAPTLHKLSIQAFHPVLIDGKAIQLHPLVCSAFNADFDGDQMAVHV
PLTEEAIAECKILMLSSMNILLPASGRAIAVPTQDMVLGIYYLSKEKEDAKGTHKLFADI
NEVMTALESDYLDLNAKIRTKIDNQVIYTTAGRLIIKSILPDFVPVNLWNKVLKKKDIAN
LVDYVFKEGGPKITAEFLDNLKELGFKYSTVTGISISAYDIKVPDSKKRLIEEAKRKVKE
IQQQFQAGLLTEQERYNKIIDIWTDTSNEVAKEMMELMKNDKDGFNSVYMMADSGARGSS
AQIRQLAGMRGLMAKPDGTIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKITMDDCGTHEGVEITDISVGNELIEPLEDRIFGRVLAQDIMDPITN
EILFSEGTLLDEEKTRKIIEAGIKSVTIRTPITCKAEKGVCAKCYGLNMAEGKLVKPGEA
VGIIAAQSIGEPGTQLTLRTFHVGGTASRSAEERQVVATKEGFIRYYNLKTYETEDGKII
VANRRNAAVLLVEPKIKALFNGEIEVKPIHDEVLITLSNGEEKVRYSFKKSDFARPNELA
GVSGKIEGKLYLPYESGTKVEAGESIVEIIKEGWNIPNRIPYAAILKVKDGAPVTQKIVS
GAKGVVKYYKLKGDYLERFEGVKEGEKIEEKGLFAVIADEEGREAARHYIARGSIIEVAD
DQSVDKDTVIAMPAKSDKTVIAEWDPYSIPIIAEKEGVITFEDIIPGVTAVEQVDEFTGE
TRLTINEYIPAEYKPAIVLAPKDGSEIIRYVLDPKTAIYVQNGQEVKLAQTLAKTPKAAA
KSKDITGGLPRVSELFEARRPKDPAVVAEIDGVVSFGKPSRGKQRIIITADTGQTVEYLI
DKNRQILVHNGEFVHAGERLTDGTVSGHDILRTLGEKALMYYMVSEIQQVYRRQGVNISD
KHIEIIVSQMLRQVKIVDSGDTKFIPGDLVSKKEFRKENEKILRLGGQPAIAEPILIGIT
RAAVSSDSVISAASFQDTTKVLTEASVSAKVDHLEDLKENVIIGRLIPVGTGLYKDRKVK
VETASQE
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactggtaccaattgaaatcggtgaagagaaaagaccaaaagatatcaaggcg
atccaatttcgccttgctagtcctgaaaaaatcctttcttggtcccatggtgaggtaaaa
aaacctgaaacgattaattacagaactttaaaaccagagcgtgacggtcttttttgtgca
aaaatctttggtccaattaaagattatgagtgtctttgtggaaagtataagaagatgcgc
tacaaaggtgtagtgtgtgaaaagtgtggtgttgaagtaacgactagtaaagttcgacga
agccgaatggggcatatcgaacttgtaacgccagtagcgcatatatggtacgtaaactct
ttgccaagtcgaattgggacgctgcttggcgtgaaaatgaaagatttggaaagagttttg
tactatgaagcctatatcgtcaaaaatcctggggaagcatattacgattttgagaagaaa
aaccccgttaaaaagtatgatgttttgaatgaagagcagtatcaacagctcgttcagcat
tttggtgacactggatttgatgccagaatgggtggcgaggttgtcaaagagcttttggaa
gagtttgatcttgtggaagcttttgaacagcttcgagaggagatgaaaaacactaactcc
gaagcgaagcgtaaaacgatcgtaaaacgtctcaaagttattgaaagctttttgaatagc
ggcaacagacctgagtggatgatgcttactgtcgttccggtacttccaccagatcttcga
ccactcgtagctttggatggtggcaagtttgcagtaagcgatgtgaatgacctgtatcga
agagtgatcaacagaaaccagcgactcaaaaggcttcttgaactagacgctcctgaaatt
atcgttcgcaatgaaaagcgaatgctgcaagaagctgtggatgctcttatcgataacggt
cgaagaggcaatgccgttaaaggtgcgaacaaacggccattgaagtctttaagtgaaatt
attaaaggaaagcagggacgttttcgacaaaacctactaggtaaacgggttgattttagt
gggcgatctgttattgttgtcggtccaaatctaagaatggatcagtgtggacttccaaag
ttgatggctttggagctattcaagccgcatcttttggcaaaacttgaagagaaaggctat
gctacgaccctcaagcaagccaaaaagatgatagaagacagagaaaatgtggtttgggag
tgtttgcaggaaattgtagatgagtatccagtactattgaaccgggcgccgacactgcac
aaactctctatccaggcattccatcctgttcttatcgatggaaaggcgatccagttgcat
ccgcttgtctgttctgcattcaacgcagacttcgacggtgaccagatggcggtacacgtt
cctcttactgaagaggcgattgcagagtgtaagatcttgatgctgagttccatgaacatt
ttgcttcctgcatcgggacgtgcgattgccgtacctacacaggatatggttctgggaatc
tactatctatccaaagagaaagaggatgcgaaggggacacacaaactttttgctgatatc
aacgaagtaatgacagcactagaatctgactatctcgatctcaatgcaaagatacgaaca
aaaatcgataatcaggtaatctataccacagcaggccgtcttattatcaaatctattttg
ccagactttgttccagtaaatctttggaataaagtattgaaaaagaaagatatcgcaaac
ctcgttgattatgtatttaaagagggtggtccaaaaattacagcagaatttttagacaac
ctcaaagagcttggttttaaatactctaccgtaacaggtatctctatcagtgcatacgat
attaaagttcctgattcgaaaaagcgactcatcgaagaggcgaaacgaaaagtaaaagag
attcagcaacagttccaagccggtctacttacagagcaagagcgatacaacaagattatc
gatatctggacagacacttcgaacgaagtggcaaaagagatgatggaactgatgaaaaac
gataaagatggtttcaattcagtgtacatgatggccgattctggtgcacggggtagctcg
gctcagatcagacagctcgccggtatgcggggacttatggcaaaacctgatggtactatc
attgagacgcctattatctcgaactttaaagagggtctcaacgttcttgagtactttatc
tctacccacggtgcaagaaaagggcttgcggatacagcactcaaaactgcaaacgcagga
tacttgacacgaaaacttgtagatgttgcacaaaacgtgaagattacaatggatgattgc
ggaacgcacgaaggtgttgagattaccgatatctcagtaggaaacgagcttattgagcca
ttggaagaccgaatatttggacgtgttctagcccaagatattatggatccgataacaaat
gagattttgtttagtgaagggacacttcttgatgaagagaaaacgcgaaagatcatagag
gctggaatcaagtctgtaaccattcgaacgccgattacatgtaaagcagagaaaggtgta
tgtgcgaaatgttacggtctcaatatggcggaaggcaaactggtaaaacctggtgaagca
gtcgggataattgctgcccaatctattggtgagccaggaacgcagttgacacttcgaacc
ttccacgttggtggtacggcaagcaggagtgcagaagagcggcaagtcgttgcaactaaa
gagggctttatccgatactataacctcaaaacatacgaaacggaagatggcaaaatcatc
gtagccaacagaaggaatgctgcagtacttttggttgagccaaaaattaaagctcttttt
aatggcgaaattgaagtgaaacctattcatgatgaagtactgatcaccctttctaatggc
gaagaaaaagtacggtatagttttaaaaagagcgattttgcaagaccaaatgaattggct
ggtgtaagtggcaaaatagaagggaaactctacttaccttacgaaagtggcacaaaagta
gaagcaggggagagtattgttgaaattatcaaggagggatggaatatcccaaataggatt
ccgtatgctgcgatacttaaagtgaaagatggcgctcctgtgactcaaaaaatcgtaagt
ggtgccaaaggagttgtaaaatattacaaactcaaaggggactatctagagcggtttgaa
ggtgtaaaagagggtgaaaagatagaagaaaaaggtctttttgccgtgattgccgatgaa
gagggtagagaagcagcaagacactatattgcaagaggctctataatcgaagttgccgat
gaccagtctgtagataaagatactgtaatcgcaatgccagcaaaatccgataaaacggtt
attgcagagtgggatccatactctattccaattattgctgaaaaagagggcgttattacg
tttgaagatattattccaggtgtgacagcagttgagcaggtggatgaatttaccggcgaa
acaagacttaccatcaatgaatatattccagctgagtataaaccggcgatcgttctagca
ccaaaagatggaagtgaaattatccgatatgtccttgatccaaaaactgccatctatgtg
caaaatggccaagaagtgaaacttgctcaaacgttggcaaaaacaccaaaagctgcggct
aaatcaaaagatattaccgggggtcttccaagagtgagtgaacttttcgaagcaagacgt
ccaaaagatccggcagttgtagcggagatcgatggtgttgtcagttttggaaaaccaagc
cgcggaaaacaaagaattatcattacagctgataccggccaaacggtagagtatctgatc
gataaaaatagacagattcttgtccataacggtgagtttgtccatgcgggtgaaagatta
accgatggcaccgtgagtggacatgatattcttagaacgctcggtgaaaaagcgttgatg
tactacatggtaagcgaaattcagcaagtgtatagaagacaaggggtgaatatctccgat
aaacacattgagattattgtttctcagatgcttcgacaagtaaaaatcgttgatagcgga
gatacaaagtttattcctggtgatcttgtgagtaaaaaagagtttagaaaagagaatgaa
aaaatattaagactcggtggtcagccagctattgcggaaccaattttgattggtatcaca
agagctgcggtaagctcagactctgttatcagtgcagcatctttccaagatacgacaaaa
gttttaacagaagcgagtgtgagcgcgaaagtagatcatctagaagatctcaaggaaaat
gtcattatcggtcgacttattccagttggaaccggtctatataaagatcggaaggtgaaa
gtggaaacagcaagccaagagtag
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