Nitratiruptor sp. SB155-2: NIS_0678
Help
Entry
NIS_0678 CDS
T00565
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03030
DNA replication
nis03430
Mismatch repair
nis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIS_0678 (dnaE)
03430 Mismatch repair
NIS_0678 (dnaE)
03440 Homologous recombination
NIS_0678 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nis03032
]
NIS_0678 (dnaE)
03400 DNA repair and recombination proteins [BR:
nis03400
]
NIS_0678 (dnaE)
Enzymes [BR:
nis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NIS_0678 (dnaE)
DNA replication proteins [BR:
nis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NIS_0678 (dnaE)
DNA repair and recombination proteins [BR:
nis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NIS_0678 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
T2SSK
Motif
Other DBs
NCBI-ProteinID:
BAF69792
UniProt:
A6Q2T3
LinkDB
All DBs
Position
682051..685575
Genome browser
AA seq
1174 aa
AA seq
DB search
MKPNFTHLHLHTEYSLLDGANKIKALAKKAKELGMSAVAMTDHGNMFGAIDFYKTMKAEG
LKPIIGMEAYLHNSDDLGDKSTRQRFHLCLFAKNEIGYKNLMFLSSMSYIKGFYYYPRIN
KKLLAEHSEGLICTSACLQGEVNWHLNTNERNTKFGAKGYEEAKKVALWYKEVFGDDFYL
ELMRHGIHDQLAIDEQIIKLSLETGIKIVATNDTHYLEKKDAEPHEAFMCIAMNKLYDDP
NRLRHSVHEFYLKSPEEIAKLYADIPEALENTQEIVDKCNLELNLGNPTPPNFKFTVEYA
KEYGLEVPTSERYSFENDEVLFEYICKEGLQKRLEYVPKEQHQKYWDRLQHEIDIIKKMK
FPGYMIIVWDFVREAKKRGIPVGPGRGSAAGSLVAYAMGITDIDPLKYNLLFERFLNPER
VSMPDIDIDFCQERRGEIIDYVVQKYGRYNVAQVITFGTLLAKGVIRDVARVLGLSYNDG
DRMAKLIPDKLGITLKEAYEQESKIKELIESDPKFERVWRFALALEGLKRNAGMHAAGVV
ISNEELWHKTPLYKPSGEETIVTQYSLNFLEDVDLIKFDFLGLKTLTVIDNAVKLVEKRY
NTKIDWNRIDLNDKKVYDLIQSGHTLGLFQIESDGMQRLNARLKPTTFEDIIAVLALYRP
GPMESGMLDDFIERKHGRKQVYYPFEEVSFDELKETLEPTYGMIVYQEQVMQIVQTIGGF
SLGEADIIRRAMGKKKRDLMEEYKREFVKRASERGFDAKKSEILFELIEKFAGYGFNKSH
SAAYAMITFQTAYLKAYYPQEFMAALLTSEQDNTDKIVKYVDEVKRLGIKLLPPDVNLSS
LEFNATTIDGEDVILFGLGAIKGVGKSAVLSILEARNEGVFKDLNDFLQRIDPNKVNKKV
LEALIKSGAMDSFGYSRRTMLLGIEKIVTASHEIARAKKMAENSLFGDAQELIDIKVELE
DLGEYDMKQILEFEKETLGFYVSGHPLDPFRSELEKIHYTLSSDLENIADSSEALFVGKV
EEIKTKISNKGNKFGIVSIMDLHGNIEMMLFSDKLEELERMDLEKPVAFKVYVTKNDSFT
RIRCDKIMSLEEAKNEHITTKIEEKYEEPLVIRLDLTHEIARLEELYHLAMQHPGKKPLK
LVIVSKLQEVEIESQVYVNGDFAKEVQSLGVQVA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaacttcacccatctgcatctacatacagagtattcccttttggatggtgcc
aataagataaaagcccttgcaaaaaaagcgaaagaactcggtatgagcgctgttgccatg
acagatcacggcaatatgtttggagctattgatttttacaaaacgatgaaggctgaaggc
ctcaaaccaattattggaatggaagcctatttgcacaactccgatgatctcggtgataaa
tccacaagacagcggtttcatctctgtctttttgccaaaaatgagatagggtataaaaat
ctgatgtttttaagctccatgagctatatcaagggtttttactactacccaagaatcaat
aaaaagcttttagccgaacacagcgaggggcttatctgtacaagtgcctgtttgcaaggt
gaggtgaactggcatctcaacaccaatgagagaaacacgaaatttggcgcaaaagggtat
gaagaagccaaaaaggtggctttgtggtacaaagaagtttttggagatgatttttatctg
gaactcatgcgccacggcatccacgatcagttggcgatcgatgagcaaattataaagctg
agccttgagactgggatcaaaatagtggctacaaacgatacccactacttggaaaaaaag
gatgcggaaccgcacgaagcctttatgtgtatcgctatgaacaaactctatgacgatcca
aacagactcaggcacagtgtgcatgagttttatctgaagtctcctgaagagatagcaaag
ctttatgccgatattcctgaagctcttgaaaatacgcaagagatcgtggataagtgtaat
cttgagctcaatcttggaaacccgactccgccaaattttaaatttactgtggagtatgcc
aaagagtatggtttggaagtaccgacaagtgagcgatacagttttgaaaacgatgaggtg
ctgtttgagtatatctgtaaggagggtttgcaaaagaggcttgagtatgttcctaaagag
cagcatcaaaagtattgggataggctgcaacatgagatcgatatcatcaaaaagatgaag
tttccgggatatatgattatcgtttgggactttgtacgagaagcgaaaaaaagaggtatc
ccggtggggcctggacgagggagcgctgcgggaagtctcgtagcatatgccatggggatt
accgatatcgatccactcaagtacaatcttcttttcgagcggtttttaaatccagagcgg
gtgagtatgcccgatatcgatatagatttttgccaggagcgccgaggggaaatcatcgac
tatgtggtgcaaaagtatggacgatacaacgttgcgcaggttatcacttttggtacgctt
ttggcaaaaggggtgatccgcgatgtcgcaagggtcttggggttaagctacaacgatgga
gatcgcatggcaaaactgattccagacaagcttggtatcacactcaaagaggcctatgag
caagagtcaaaaatcaaagagctcattgaaagtgatccgaaatttgagcgggtgtggcga
tttgcattggcgctggaagggctcaaaagaaatgccggtatgcacgccgcaggcgttgtc
ataagcaacgaagagctctggcacaaaactccgctgtataaaccgagcggggaagagacg
attgttacgcaatactctttgaactttttggaagatgtagatttgatcaagtttgacttc
ttgggacttaaaacattgaccgtaatcgacaatgctgtgaaacttgtggaaaaacggtac
aacacgaagatcgactggaacagaatcgatctcaatgataaaaaagtgtatgatcttatc
caaagcgggcatacactgggcctgtttcagatagaatctgatgggatgcagcgtctcaat
gcaaggctcaaacctacaacctttgaagatatcatcgcagtacttgccctttatcgccca
ggtcctatggaatcgggcatgctcgatgattttatagaaagaaaacatgggcgaaagcag
gtctactatccttttgaagaggtaagtttcgacgaactcaaagagactttggaacctacc
tatgggatgatcgtctaccaagagcaggttatgcagatcgtacaaactattggtggattc
agtcttggcgaagccgatatcatcaggcgggccatggggaaaaagaaacgagatctcatg
gaagagtacaaaagggaattcgtcaagcgtgcaagcgaacgcggatttgatgcgaaaaag
agtgaaatccttttcgagcttattgagaagtttgcaggatacggatttaacaaatcccac
tctgcagcctatgcgatgatcacgtttcaaactgcctatctcaaagcctactatccgcaa
gagtttatggctgctcttcttacaagcgaacaggataacacggacaagatcgtcaaatat
gtggatgaggtgaaacggcttggcatcaaacttttgccaccggatgtcaatctttcatct
cttgagttcaacgctacgacaatcgatggtgaggatgtcatcctttttgggcttggagcg
atcaaaggggttgggaaaagtgctgttttaagcattttggaagcaagaaatgagggggta
tttaaagatctaaatgatttcttgcaacggatcgatccaaacaaagtgaacaaaaaggtt
ctagaagctttgatcaaatccggtgcgatggattcttttggatacagcagaagaacgatg
cttcttggaatcgaaaagatagtcactgccagccacgagatagcgcgagccaaaaagatg
gctgaaaactcgctctttggggatgcccaggagcttatcgatatcaaggtggagctggaa
gatctaggcgaatacgatatgaaacagattttggagtttgagaaagagaccctgggattt
tatgtatcagggcatccactcgatccatttagaagtgaacttgaaaagattcactacacc
ctctcaagtgatctagaaaatatagccgattcttcagaagcactttttgttgggaaagtg
gaagagatcaagacaaaaatcagcaacaaaggcaacaaatttggcatcgtcagcatcatg
gatttgcatggcaatatagagatgatgctctttagcgacaaattggaagaactggagcga
atggatcttgaaaaaccggtcgcattcaaggtgtatgtcacaaaaaatgacagctttacc
cgtatccgctgtgacaagatcatgagcctggaagaggcaaaaaatgagcatataacgaca
aaaatagaggaaaaatatgaagaacctcttgttattcgacttgatcttacccatgaaatt
gcacgacttgaggagctttaccatctggcgatgcagcatcctggcaaaaaaccattgaaa
ctggtaatcgtctccaaactgcaggaggtggagatagagtctcaggtctatgtcaatggc
gactttgccaaagaggtgcaaagtttgggagttcaggtggcttaa
DBGET
integrated database retrieval system
