Nitratiruptor sp. SB155-2: NIS_1162
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Entry
NIS_1162 CDS
T00565
Name
(GenBank) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIS_1162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nis03019
]
NIS_1162
03016 Transfer RNA biogenesis [BR:
nis03016
]
NIS_1162
Enzymes [BR:
nis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIS_1162
Messenger RNA biogenesis [BR:
nis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIS_1162
Transfer RNA biogenesis [BR:
nis03016
]
Prokaryotic type
tRNA degradation factors
NIS_1162
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
CSD2
OB_RNB
SSXT
Motif
Other DBs
NCBI-ProteinID:
BAF70271
LinkDB
All DBs
Position
1180626..1182557
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AA seq
643 aa
AA seq
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MKEFILKLIRGIDKKDIPREYLPLVDDLLRHKIIKVDGKIYTISSKYRVGKIDIARNGTG
FLEVLGINAKDLLIEPQDLNGATKGDLVVAKRIFKGGGRPKAKVVYILEKAFRFSVAYYD
KENNIFFNVKNEMPIAVKASKKSLKNLPDGTVVKIDNEAAFIVEVLGVLDDPFVDEKISL
ALYNKKEEFSKEAELEASAYGSVVDKSLYPNRVDLTHLPFCTIDPVTAKDHDDAIYFDQN
SNTLYVAIADVSEYVSAMGPIDKEAKERGFSIYLPHKSIPMLPRSLSEGICSLKENEERL
AYVSKITLNESYEPVKEELFDAIIKSRRKYSYDRVDEFIEGKRIGIDNTDEEILAWLMPL
FEVTKELRKKRLQKGFEFTNPEIRLVLDENQELVETVIETETPSHTLIEDCMLLANKATA
KMFDYGIFRTHEEPSMEKIEELLNDLAQVGIFTKEYNTIHELFLHIQKEAEKLGIKEHVD
RLLIRTQKQAGYTAENIGHFGLGFEKYTHFTSPIRRYSDLTLHRLLKALIQENKKQLDFI
LRNIEPLTVRISELEREAAKVEWDFMDRKFARWAKRNLGKRFRAIVTDPESTPIAQIDDE
IKGARIFLPRAQVELFDTIIVEIIDVNIATTKIYAKVVEVLDV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagaatttatactcaaactcattcgaggaatcgataaaaaagatattccaagagag
tatctacctttagtggatgatcttctacgccataaaatcataaaggtagacggcaaaatc
tatacaatcagttcaaaatatcgtgtcggaaaaattgacattgcaagaaatggcacagga
tttttagaggttcttggcatcaatgctaaagatcttctcatagaaccccaagatcttaat
ggagccaccaaaggcgatcttgtagtcgccaagcgaatatttaaaggcggaggtcgccca
aaagcaaaagtggtttatatccttgaaaaagctttccgcttcagtgtggcgtactatgac
aaagaaaacaacatctttttcaatgtgaaaaatgagatgccaattgctgtaaaagcatca
aaaaagtcacttaaaaaccttccagatggtaccgttgtgaaaattgacaatgaagcagcc
tttatcgtcgaagtccttggtgttttagacgatccatttgtagatgaaaagatttcatta
gctctttacaacaaaaaggaggagtttagcaaggaagcggaacttgaagcaagcgcctat
ggaagcgttgtggataaaagtctctatcccaatcgagtcgatctgactcatctgcccttt
tgcacgatcgatccagttaccgcgaaagatcacgacgatgccatttactttgatcaaaat
tcaaatacactctatgttgccattgccgatgtaagcgaatatgtcagcgctatgggacca
atcgacaaagaggcaaaagagcggggctttagtatctaccttccacacaaatcgatccct
atgctgccaagaagcctgagtgaagggatctgctcactcaaagaaaatgaagagcgcttg
gcctatgtgagtaaaatcacactcaatgaatcgtatgagcctgtcaaagaagaactcttc
gatgccattatcaaaagtagacgaaaatatagctatgaccgtgtagatgagtttatagaa
ggcaaacgaatcggaattgacaacacagatgaagagattttggcatggctgatgccgctt
tttgaagtgactaaagaacttcgaaaaaagcggctccaaaaagggtttgaatttaccaat
cctgaaatcagactcgttcttgacgaaaatcaagagcttgttgaaactgttatagaaaca
gaaacacccagtcatacactgatcgaggattgtatgcttttagcgaacaaagcgactgcc
aagatgtttgattatggaatctttcgaacccatgaagagccttccatggaaaagatcgaa
gagctattaaacgatttggcgcaagttgggatcttcacaaaagagtacaacaccattcac
gaactctttttgcatatccaaaaagaggccgagaaactgggcatcaaagagcatgtggac
aggcttctcattagaacccaaaaacaggcaggctacaccgccgaaaatattggacatttt
ggacttggttttgaaaaatatacccatttcacttcccctattcgaaggtacagcgatttg
acactccatagactgcttaaggcattgatccaagaaaacaagaagcagctcgattttatt
ttgcgaaacattgaaccgttaaccgttcgtatcagcgaacttgagcgagaggcggcaaaa
gtggagtgggactttatggatagaaagtttgccagatgggcaaaaagaaatttgggcaaa
cggtttcgagccattgtcactgatcctgaatcaacgccaatcgcccaaattgatgatgag
ataaaaggagcccgaatctttttgccaagagcccaggtagaactttttgatacaatcatc
gttgaaatcatcgatgtcaatatcgccaccacaaaaatctacgcaaaagtagtggaagta
ttggatgtataa
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