Nitratiruptor sp. SB155-2: NIS_1461
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Entry
NIS_1461 CDS
T00565
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIS_1461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nis03400
]
NIS_1461
Enzymes [BR:
nis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIS_1461
DNA repair and recombination proteins [BR:
nis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIS_1461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_16
SLFN-g3_helicase
AAA_30
TsaE
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAF70568
UniProt:
A6Q509
LinkDB
All DBs
Position
complement(1484570..1487500)
Genome browser
AA seq
976 aa
AA seq
DB search
MAARFYEYLRSSIPQILVVADEKEAQEASSAAKVLGIDHYILPDFRAQYGDDLRVFKEEL
DELLAVLNDYYHTPKMLIAPVHTIAKPMPVQRYFARKRVEFGDEFELESLKELLYQWGYT
FVDIVESKGEASFRGDIVDIFAPNFDKPIRLSFFDTQIESIRYFDPQTQKSIKEELEAFT
LYPAFLIQDEALQEVIEQSDFDVFDKDLLSVGFWVAERASLLEGKEAIRSGSFDLEELYS
YEGLIPKEQFFALPIIPEAKEYNEIEVLDINRVIQTKQNKKIKVLVKSPEFARRSSIKEL
EKVEFIYTDAILNIEGPDEVILSLNKPKKRRAKPPSIVIDELQPGSYVVHEQHGIGIFKG
LKAIEILGAKRDFVELEYAGGDKLLVPVENLDVLSRYIADSGSVAVVDKLGSQSFAKLKA
KVKERLFEIAADIVKIAAQRELTPGKKIITPPDITLFQSHAGFEYTEDQKRAIDTILQRL
SSGKVMDMLLSGDVGFGKTEVAMNAIYAIVKNGYQAAVVVPTTLLSAQHYESLVKRLEPF
NISVTKIDRFVTAKEKKERLQALKEGTFDVVVGTHALFGAEFKNLGLVVIDEEHKFGVKQ
KEKLKAFSKDVHLLSMSATPIPRSLNMALSQLKDLSEIRTPPQNRKPVRTYVKEYQDKLV
KEVILRELRRGGQVFYIYNSIAGIEEKKEDLQQLLPGKKILVLHSKIAAATTEKELLRFA
QGEYDILLSTSIVESGIHMPNVNTIIVEGADRFGIADLHQLRGRVGRGGKEGFCYYLVED
KQKLTEEAKKRLIALESNSYLGSGAALAYYDLEIRGGGNIIGAQQSGHIKNIGYSLYLQM
LEETITKLTKGEIEEEPQVELKLSVNAYISSEVVREDRLKLELYRRLAQVKEPEEIAQIQ
EEIEDRFGKLDSYTKNFLDLIHIKLLALEHGIKKISNYNQNITFDFGDKKETIKARSKDD
DDILHTTLRYLKALAQ
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggctgccagattctatgaatatctaagatcaagcattccgcaaatcttggtcgttgca
gacgaaaaggaagcgcaagaggcaagcagtgcggcaaaagtacttggaatcgatcattac
attttgccagattttagagcccagtatggtgacgatctgcgggttttcaaggaggagctt
gatgagctgcttgcggtattgaacgattactaccatacgccaaagatgctcatagcccct
gtacataccattgccaagccgatgccggtacagcgctactttgcgaggaaaagagtagag
tttggggatgagtttgagcttgaatcgcttaaagagctgctctatcaatggggatatacc
tttgtggatatcgtagagagcaagggagaagccagttttcgaggcgatatcgtggatatc
ttcgcaccaaatttcgataagcctatccgtcttagttttttcgatacacagatagaatcg
atccgctattttgatccccagacccaaaaaagtatcaaagaggagcttgaagcttttacc
ctctatccagcctttttaatccaagatgaggccttgcaagaagtgattgaacagagtgat
tttgacgtttttgacaaggatctgttgagtgtaggattttgggtggccgagcgggcttct
ttgcttgaaggaaaagaggcgatacgtagtggaagctttgatctggaagagctgtacagc
tatgaaggactcataccaaaagagcagttctttgcacttccaatcatacctgaagcaaaa
gagtataacgagatagaagttctcgatatcaatagagtcatccagacaaagcagaataaa
aagatcaaagtgcttgtaaaatcaccggagtttgccagaagaagcagtatcaaagagctt
gagaaggtagaatttatctataccgatgcgattttgaatatcgaagggccagatgaggtc
atactatcgctcaataaaccaaaaaagagaagagccaaacctccatctatcgttatcgat
gagttgcaacctggaagttatgtggtccatgagcagcatggcatcgggattttcaaagga
ctcaaagcgatcgaaattttgggagccaaaagagattttgtggaactggaatatgctgga
ggtgacaagcttttggttccagtggaaaacctcgatgttctcagccggtatattgccgat
agcggtagtgtagcggttgtcgataaacttggcagccaatcctttgcgaaactcaaagcg
aaagtgaaagagagactttttgagattgctgctgacatcgtgaaaatcgctgcgcagcgt
gaactcactcctggcaaaaagatcatcacaccgccagatatcactctttttcaatcccac
gccggatttgagtataccgaggatcaaaaaagagcgattgatacgattttgcaaagactc
tccagcgggaaagtgatggatatgcttctaagcggcgatgtgggatttggtaagacagaa
gttgccatgaacgctatctatgccatagtgaaaaatggctatcaagcggctgtggtcgtt
ccaacgacgcttctatcggcccagcattatgagagtcttgtgaaacggttggagccattt
aacatttcagtaaccaagatcgatcgatttgtcactgccaaagagaaaaaagagcgcttg
caagccttgaaagagggaacgttcgatgttgtggtgggaacccacgcgctttttggagca
gaatttaaaaatttggggcttgtcgttatcgatgaggagcacaagtttggcgtgaagcaa
aaagagaaactcaaagctttcagtaaagatgtgcatctattgagtatgagtgcaacgccg
attccaagaagtctcaatatggccctttcccagctcaaggatctcagcgaaattagaaca
ccgcctcaaaacagaaagcctgttcgaacctatgtgaaagagtatcaagacaaacttgtc
aaagaagtgattttgcgagaactaagaagaggagggcaggtcttttatatctacaactcc
atcgcaggcattgaggagaaaaaagaggatcttcagcagctcctgcccggaaaaaagatt
cttgtactgcattccaaaatagcggcggcaacaacggaaaaagagcttcttcgctttgcc
cagggtgaatatgacatcttgctttccacttccattgtggaaagtggtattcatatgcca
aatgtcaatactatcatcgtagaaggagctgatcgattcggaattgcggacctgcatcag
ttgcgggggcgtgtaggacgaggcggaaaagagggattttgctactatctggtagaggat
aaacaaaaactaacagaagaggcgaaaaaacgacttattgcactcgaatccaattcttac
cttggaagtggagcagctttggcctattatgatctggagattcgaggtgggggtaacatc
ataggggctcagcaaagcggacatatcaaaaatatcgggtatagcctctatctgcagatg
cttgaagagacgataacgaaattgacaaaaggggagatcgaagaggaaccccaagtggag
cttaaactgagcgtcaatgcctatatttccagcgaagtggtacgtgaggatcgactcaaa
ctcgagctatacagacggcttgcccaagtcaaagagcctgaagagatagcccagattcaa
gaggagatcgaagatcgtttcggaaaactggatagctatacaaaaaattttttggatctc
atccatatcaagcttttagcgttggaacatggaatcaaaaagatctcaaactacaaccaa
aatatcacatttgattttggtgacaaaaaagagacgatcaaagcaagaagcaaagatgat
gacgatatattgcatacgacattgagatatttaaaggcgctagctcaatga
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