Nitratiruptor sp. SB155-2: NIS_1709
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Entry
NIS_1709 CDS
T00565
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD-box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIS_1709 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nis03019
]
NIS_1709 (deaD)
03009 Ribosome biogenesis [BR:
nis03009
]
NIS_1709 (deaD)
Enzymes [BR:
nis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIS_1709 (deaD)
Messenger RNA biogenesis [BR:
nis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIS_1709 (deaD)
Ribosome biogenesis [BR:
nis03009
]
Prokaryotic type
rRNA helicases
NIS_1709 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
AAA_22
AAA_19
HEM4
YfdX
Motif
Other DBs
NCBI-ProteinID:
BAF70815
LinkDB
All DBs
Position
1726533..1727948
Genome browser
AA seq
471 aa
AA seq
DB search
MTFSDFNLKPQIMKAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLL
NMLELDGEVEALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAAV
VVATPGRLLDLLKSGKIELNPKFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLFSAT
MPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLLDYKNPTKSI
IFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAARGL
DISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQKEVGSSLI
NKEIPTSAEVKNEKQKSMLDMILSQEVSKEAIELVELLESQIDISTAALKLASMVIKNDT
VSGNERIGKSLKEIEKMLEQAKRELSRPQRSGGRNNRGYRGNRRPRNAHRR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgactttttctgatttcaatctgaaaccccaaataatgaaagcgatagagcaagccggc
ttcaaagagcccagtcctatccaaaaagaggcgattcctgtcgtattagcaggaaaagat
atggtgggccaagcccacacaggcaccggtaaaacggctgcttttgcacttccactttta
aatatgttagagctcgatggcgaagtagaagcccttgtgatagttccaacgagagagttg
gctactcaggttagcgacgagatttttcgacttggaaaatatcttggcatcaaaacagcc
acagtctacggaggaagctcctattcaagacagctcaatcatatagccaatgcagcagtc
gttgtagcgactcctggaagactcttggatcttttaaaaagtggcaaaatcgaactcaat
ccaaaatttgtcgttttggacgaagcggatgagatgcttgatatgggctttttagatgat
ataaaagccattttcaactatcttccaaccaatagacaaactctacttttcagtgcgaca
atgccacaggccatcaaagagttggctcaacagattctccactcacccgagtttatctct
attacgaaaaaagaggtgacaaacgtaaatatcaagcagttttactatgtggttgacgag
catgaaagagatgaagctctcattcgcttgctcgattacaaaaatcctacaaaatcgatc
atcttttgccgtatgaagatagaagtagatcgtcttgcgcaatttcttgaagcccaaggt
tacagtgcaaaaggacttcacggcgatatgcaacagcgccagcgagaagagaccatcaaa
gcttttaaacgaggaaacatcgagattttgatcgcaacagatgtggcagcaagaggcttg
gacatcagtgacgtaagccatgtgttcaactatcacattccgtttgacccagaaagctat
gtccatagaatcgggcgaacaggaagagctgggaaagaaggaatagcgatcagtttagtg
actcctcatgaatttaaacagctcctacgcatccaaaaagaggtgggaagctctttaatc
aataaagagattccaacctctgcggaagtgaaaaacgaaaagcaaaaatcgatgcttgat
atgattctttctcaagaggtatccaaagaagcgatagaacttgtggaacttcttgaatca
caaatagatatctccacagctgcactcaaactggcttccatggtcatcaaaaacgacacc
gtcagtgggaacgaaagaatcgggaaaagcctcaaagagatcgaaaagatgctcgaacag
gcaaaaagagaactttccagacctcaaagaagcggcggacgcaacaatagaggctatcga
ggcaaccgaagacctcgtaacgcccatagacgataa
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