Nitrosomonas sp. AL212: NAL212_0605
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Entry
NAL212_0605 CDS
T01443
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nit
Nitrosomonas sp. AL212
Pathway
nit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NAL212_0605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nit03400
]
NAL212_0605
Enzymes [BR:
nit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NAL212_0605
DNA repair and recombination proteins [BR:
nit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NAL212_0605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
DUF3638
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADZ25544
UniProt:
F9ZDX1
LinkDB
All DBs
Position
complement(481121..484585)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSIMQLPHSLPKPGTVFRYADLDGSSDALFLAQVAQQARPVTIITAHALDAQRLLEEIPF
FAPELRTHLLPDWETLPYDVFSPHHDLVSERLATLYQVMHGVCDVLIAPLTTALYRMLPR
EYLAAHTFFLKQGETLDVPGLRSQLTLAGYSHVTQVFSPGEYSVRGGLIDLFPMGSPLPY
RIDLMDKEIDTIRTFDVDTQRSIYPVKEIRLLPAREFPLDEAGRTCFRGNFRDKFEGDPS
KKQIYKDISKGLTPAGIEYYLPLFFDQTATLFDYLPENTLLCLHHDVRPVIEEFWRDTQS
RFQLLRGDLDRPLLPPLELFLSGDSFFGTLKPYARIEILSTAQDSKLTAPKNTLPLPSIQ
VNRHAENPLEKLAIFLTHFSRSGGRVLLLAESMGRRELIAEYLHQYGLHPDNCEDYAQFL
GNSSSFMISVSPLHSGFIHESAQLAFITESELYATHVHGRRERESRKTTSTDNILRDLSE
IKPGDPVVHEQHGIGRYLGLISMDVGEGEPGELSEFLSLEYDGGDKLYVPVSQLYLIGRY
SGAAPESAPLHKLGSGQWDKAKRKAMQQVRDTAAELLNLYAQRAAREGHTFTLKQHDYDA
FAEGFGFEETADQAAAIKAVIEDLTSGKPMDRLICGDVGFGKTEVALRAAFIAVADGKQV
AVLVPTTLLAEQHFQNFSDRFGLIADQWPVRIAELSRFRSAKEQTQAIAGLAKGEIDIII
GTHKLIQKDVHFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLE
GLRDFSIIATAPQRRLAIRTFVSGFSMGIIREACLRELKRGGQIYFLHNEVSTIQLMLEK
LTGLLPEARINIAHGQMPERELEHVMRDFYQQRFNILLCTTIIETGIDIPSANTILINNA
HKFGLAQLHQLRGRVGRSHHQAYAYLLTPPEEALGAQAKKRLEAIQAMEELGSGFYLAMH
DLEIRGAGAVLSESQSGEMQEIGFSLYSSMLDSAIQSLKQGKEPDMQHPLGVATEINLHV
PALLPDDYCHDIHERLVLYKRMANCSDDEQLDDMQRELIDRFGLLPNPARALLDCHRLRI
AAKPLGITRIDASAESIQIQFIPNPPIDPAKIIQLIQSSREYSLSGPDRLKIQVQIEDVN
KRVMRVKELMQKLG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataatgcaacttccacactccttacctaaacccggcaccgtattccgttatgct
gatctcgatggttccagcgatgcattattcctggcgcaagtggcgcaacaggccaggcct
gtcacgatcattaccgctcatgcactggatgcgcaaagattattggaagaaattccattt
tttgctcctgagttaagaacgcacttactaccggattgggaaacactgccttacgatgtt
ttttcaccccatcacgatctcgtctcagaacggctggcaacactctatcaagtgatgcac
ggcgtctgcgatgtattgattgcgccgctgaccacggcactctatcgcatgctgccacgc
gaatatctggctgcgcatactttcttcctcaagcaaggcgaaacgctggacgtaccggga
ttacgcagtcaattgacattggcgggttactcgcacgtcacacaggttttctcacccggc
gaatacagcgtacgcggcggtttgatcgatttgttcccgatgggcagcccgttgccctac
cgtatcgatttaatggataaagaaatcgacaccatccgcacattcgatgtggatacgcag
cgcagcatttatccagtcaaggaaatacgcctgctgcccgcgcgggaatttcccctggac
gaagcgggacgcacctgcttccggggtaatttccgcgataaattcgagggcgatccgtca
aaaaaacagatttacaaggacatcagcaaaggcctgacacccgcaggcattgagtattat
ttacctttgtttttcgatcagacggctacgctatttgattatttgccagaaaataccctg
ctttgcctgcatcacgatgtacgtccggtgatcgaggaattctggcgcgatacgcaatcc
cgttttcaattactgcgtggcgacctggatcggccgttgctgccgccgctggaattattc
ctatccggggatagcttcttcggcacgttaaaaccctatgcgcgcattgagattttgtcc
actgcgcaagactcgaaactgaccgcccccaagaacactctcccgctgccttcgattcaa
gtcaatcggcacgccgagaatccgttggaaaaactggctatatttttgactcatttttcc
cgatccggcgggcgcgttctgctgctggcggaaagcatgggacggcgcgagctcattgcc
gagtatctgcaccaatacggtctgcatccggacaattgtgaagattatgcccagttctta
ggcaactcgtcgtcctttatgatcagtgtgtcaccattgcacagcggttttatacacgaa
tccgcgcagttggctttcatcaccgaaagcgaactgtatgcaacgcatgtccacggacgg
cgcgagcgcgaatcgcgcaagaccacatccaccgacaatatcctgcgcgatttatcggaa
atcaagccgggcgatccagtcgtccatgagcagcatggcattggccgttatctcggcttg
atcagcatggatgtcggcgaaggcgagcctggcgaactcagtgaatttttgtcgctggaa
tacgatggtggcgacaagctctatgtaccggtctcacaactgtatctgatcgggcgctac
agtggtgctgcccccgaatccgcgccgctgcataaattgggcagcggccaatgggacaaa
gccaagcgcaaggcgatgcagcaggtgcgcgataccgcagcggaattattgaacttatac
gcgcaacgtgccgcgcgcgaaggtcataccttcacactcaagcaacacgactacgacgct
ttcgcggaaggattcggttttgaggaaacagcggatcaagcggccgcgattaaagcagtg
atcgaagatttaacatcgggaaagccgatggaccggctgatctgcggcgatgtgggtttc
ggcaaaaccgaggtagcgttgcgcgctgcgttcattgccgtcgccgatggcaaacaagta
gcggttctggttcccaccacgctacttgcggaacagcatttccagaatttctccgaccgc
ttcggtctgatcgccgatcaatggccggtcagaattgctgagttgtcgcgcttccgctcc
gccaaggagcaaacccaggcaattgccggtctggccaagggcgaaatcgacatcatcatc
ggcacgcacaaattgattcagaaagacgtacatttcaagaatctgggcttggtcattatc
gatgaggaacaccgttttggcgtgcggcaaaaagaacaactgaaaaaactgcgcgctgaa
gttgatgtattgacgctcaccgcgacaccgatcccgcgcacgttggcgatgtcgctggaa
gggttgcgcgatttctccatcatcgccactgcgccgcagcgccgcttggccatccgcacc
tttgtcagcggattctcaatgggcatcattcgcgaagcgtgtttgcgcgaactcaaacgg
ggcggacaaatttatttcctgcacaacgaagtcagcacgattcaattgatgctggagaaa
ctgaccggcctgctgcccgaagcacgcatcaacatcgcccacggacaaatgccggaacgc
gaactggaacacgtcatgcgcgatttctatcagcagcgcttcaacatcctgctgtgcacc
acgattatcgaaaccggcatcgacatcccgagcgccaacaccatcctcatcaacaacgca
cacaaattcggcctggcgcaactgcatcaactgcgcggccgagtcggtcgctcgcaccat
caagcctatgcctacctgctgacgcccccggaagaagcgctcggcgcgcaagccaagaaa
cgcctggaagcgatacaagcgatggaagaactcggttccgggttttatctcgccatgcac
gacctggaaatccgcggtgccggcgcggtcctgagcgaatcgcaaagcggagaaatgcag
gaaatcggcttcagcttgtacagctcgatgctggattccgccatccaatccttaaaacaa
ggcaaagagcccgatatgcagcacccattgggcgtcgccaccgaaatcaacctgcacgta
cccgcactgctgccggacgactactgccacgacatccatgaacggctggtattgtacaaa
cgcatggccaattgcagcgatgatgaacaacttgatgatatgcagcgcgaactgatcgat
cgcttcggcctattgcccaacccggcccgcgccctgctcgattgccaccgcctacgcatc
gccgccaaaccactcggcatcacccgcatcgacgccagcgccgaaagcatccaaatccag
tttatccccaacccaccaatcgacccggcaaaaattatccaactgatacagagcagccga
gaatattcactctccggccctgatcgcttgaaaatccaggtgcagatcgaagatgtgaac
aagcgggtgatgcgggtgaaggaattgatgcagaagttggggtga
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integrated database retrieval system
