Nitrosomonas sp. AL212: NAL212_1357
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Entry
NAL212_1357 CDS
T01443
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nit
Nitrosomonas sp. AL212
Pathway
nit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAL212_1357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nit03019
]
NAL212_1357
03016 Transfer RNA biogenesis [BR:
nit03016
]
NAL212_1357
Enzymes [BR:
nit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NAL212_1357
Messenger RNA biogenesis [BR:
nit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NAL212_1357
Transfer RNA biogenesis [BR:
nit03016
]
Prokaryotic type
tRNA degradation factors
NAL212_1357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ADZ26253
LinkDB
All DBs
Position
complement(1272242..1274467)
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AA seq
741 aa
AA seq
DB search
MSNKKKQNLRSFDPHYEREKKRYGHPLPSREYILQVLKQQGIPVAERLLQKLLSITKKEE
DLFNRRLSAMMREGQIFRNRKSDICVMEKLDLIKGRIQGHADKFGFLIPDDGSADLYLSA
KEMQKVLHGDHVVVREIGLDRRGRREAAIVEVLESCNKQLVGRLHIDHGILSVAAENKRI
SQDILIAQEHSLKAQAGQVVMVEIIQQPSKHTQPIGKIIEILGNYTAPGMEIEIALRKHD
LPYEFSPDIQELSIKFPKNVLKKDLSGRKDLCHLPLITIDGETAKDFDDAVFCTNDGKGY
RLYVAIADVSHYVKPHDLIDREAFNRGNSVYFPRRVIPMLPEVLSNGLCSLNPDKKRLCM
VCEIQFQANGDILNYSFYPAVMLSRARLTYTQVTAMLDDTKSCEAQEYAELLPHLQLIYK
LFKSLLKARKKRGAIDFETTETQMFFNNQGKIEKILPVQRTEAHRLIEECMLAANVCAAD
FLQKHGQTTLYRIHESPTPEKIDTLRNFLKEFGIQLGGKNKPSAQDYAQTLLKIKDRSDA
QLLQTVMLRSLQQAIYSPDLTGHFGLAYDAYTHFTSPIRRYPDLLVHRAIKAVLKGEIYQ
PGDWQEFGQHCSMTERRADDATRDVESWLKCFYMQDKIGECFDGVISSVTGFGLFVALDK
IYVEGLVHISELPSDYFHFDATKHVLLGERSGKQYRLGDRIRVKLVRVDLETSKIDFAIA
EPEKKTRQSKTKGSVKNKKSL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaataagaagaaacaaaacctgcggagctttgatccgcattatgaacgcgaaaag
aaacgctacggacaccccttacctagccgggaatatattttgcaggttctaaagcagcaa
ggtattccggtggctgagcgcttattacaaaaattgctatccattacaaaaaaagaagaa
gatctgtttaatcgccgcttgtcagcaatgatgcgcgaaggccagattttccgtaaccgc
aaaagcgatatttgcgtgatggagaaactggatttgatcaaaggtagaattcagggtcat
gccgataaattcggttttctgatcccggatgacggtagtgcagacttgtatctaagcgca
aaggaaatgcaaaaagtattacacggtgaccatgttgttgtacgcgaaattggcctggat
cgacggggacgcagagaagccgcgattgtggaggtattagaatcctgcaataagcaatta
gtaggccggttacacattgatcacggaattctatcggtagcagcggagaacaagcgcatc
agtcaggatattctaatcgcccaggagcactcgctgaaggcccaagcgggtcaagttgtc
atggtggaaatcattcagcaacccagcaagcacacacaacccatcggtaaaattattgaa
attctcggcaactataccgcgccgggaatggaaattgaaattgcattgcgcaaacatgac
ttaccctacgaattttcacctgatattcaggaactctcaatcaaatttccaaaaaatgta
ttaaaaaaagacctatccggacgcaaagatctatgtcatttaccgctgataaccattgac
ggtgagactgcaaaggattttgacgatgctgttttctgcacaaatgatggtaaaggatat
cgattatatgttgccatcgcagatgtcagtcactatgtcaaaccgcacgatctgattgac
cgagaagcattcaatcgaggaaattcggtttatttcccacgtcgtgtcattccaatgttg
ccagaggttttatctaatggattatgttcactcaatcctgacaaaaaacgtctgtgcatg
gtatgcgaaatacaattccaagccaatggcgacatattgaattattctttttatccggct
gtaatgctttcacgcgcgcgcttaacctatacccaagttactgcaatgttggatgacaca
aaaagctgtgaagcacaggaatatgcagaattattacctcatttgcaattaatttataag
ctttttaaatccttactaaaagcccgcaagaagcgcggcgcaatcgactttgaaacgacc
gagacgcagatgttcttcaacaatcaaggaaaaatcgaaaagattttgccagtacaacgc
accgaagcacaccgcttgattgaggaatgcatgctggctgctaatgtctgtgcggcggat
tttctgcagaaacacggccagaccacactttatcgcattcatgaaagccctaccccggaa
aagattgatacgttgcgcaacttcctgaaagaattcggtattcaactgggaggaaaaaac
aaacccagcgcgcaggattacgcgcagaccttactcaaaataaaagatagatcggatgca
caattgcttcaaaccgtaatgctgagatcgctgcaacaagctatctacagtcctgatcta
accggtcatttcgggcttgcgtacgatgcttatacgcattttacctcgccaatcagacgc
taccctgaccttttggtgcatcgcgcgattaaagcggtattaaaaggagaaatttatcag
cctggtgattggcaggagtttgggcaacactgctcaatgaccgagcggcgtgctgacgat
gccacgcgtgatgttgagtcctggctaaaatgcttttatatgcaggataaaatcggggaa
tgtttcgatggagtgatcagcagcgtaaccggattcggcttattcgtcgccctagacaaa
atttatgtcgagggattggtgcatatttctgagttgccgagtgactattttcattttgat
gcgaccaagcatgttttactgggagaacgcagcggtaaacaatatcgtcttggtgaccgg
atacgcgtcaagctggttcgagttgatttagaaaccagtaaaatagattttgctatagct
gaaccggaaaagaaaacaagacaatccaaaacaaagggttcagtcaaaaacaagaaatct
ctttag
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