Nitrosomonas sp. AL212: NAL212_1803
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Entry
NAL212_1803 CDS
T01443
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nit
Nitrosomonas sp. AL212
Pathway
nit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAL212_1803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nit03019
]
NAL212_1803
Enzymes [BR:
nit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAL212_1803
Messenger RNA biogenesis [BR:
nit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NAL212_1803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
DUF3892
Motif
Other DBs
NCBI-ProteinID:
ADZ26664
UniProt:
F9ZDN1
LinkDB
All DBs
Position
complement(1756808..1758238)
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AA seq
476 aa
AA seq
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MSSNISFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFT
LPMLQKLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVN
IDVQIAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQII
QMLPDQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQE
FLIDMIKKKNLQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCG
LIRILVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREET
VLLGGIERLLGIKIQVEESNSGLKNQQTEFPNKTKIIEEQKKSRAFSFKNESLSKRSKRI
EKMEDPLFSQPYISKYSDLISIQVGIDKSNKKIIHKQYPSKTLPALFIPPVTSKQK
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaatatctcatttgaacaactcggtttatcaactgatttgttgcgagctata
tctgaacaagggtatacaaatcccactccaattcaacaacaggctatacctataatcctg
aaaggttttgacgttatgggtggagctcagactggcacaggtaaaacagcgggttttact
cttcctatgttgcaaaaattagagagtcatgcgaatagtagtacatcacctgcaaaacat
ccaacacgcgcattaattttagtgccaaccagggagcttgcgatacaagtttacgagagc
gttagagcgtatggaaaatatgtggcactaaaatcagccgtgatttatgacggtgtaaat
atcgatgtgcagattgcagctatacgttctggcgtagaaatcctggtagcaacgccaggg
cgtttattggatcatcttcaacaaaaaaatttgatactttcaaaaattgaaatattaatt
cttgatgaagccgatcgaatgctggatatgggctttttgccagatataaagcaaatcatt
cagatgttacccgatcaacgacagaatttaatgttttccgcaacgttctcagaagaaatc
aagaaacttgcaggaaaaattttgaagagcccgatactgattgaagtggccaagcaaaac
tcagtcagtgatttgatttcacatatagtttattctgtagaatcaaaaaataagcaagag
tttttaatcgatatgattaagaaaaagaacttacagcaagtacttatttttacacgtact
aaacatggagcagatcatctggcacaaaaattaaatagtcgggatatcctgagctccgta
atacacggcgatagaaatcaactgcaacgaacccaagctttggataattttaaatgtggt
ttaattcgaatccttgttgcgactgatgttgcagcacgtggtcttgatattgaagaatta
actcatgtgattaattttgaactacctaataatccagaagattacgtacatcgtattgga
agaacaggacgcgcaggagctaaaggatttgcaatttcttttgttagtagagaagagact
gtcctattaggtggtatagaaagattattagggattaagattcaagtagaggaaagtaat
tctggattaaaaaatcaacaaactgagtttccaaataaaacaaaaataattgaagagcaa
aagaaatcgagagctttctcttttaagaacgagtctctatcaaagaggtcaaaaaggatt
gagaaaatggaagacccgttgttttcacaaccttatatatcgaaatattcagacttgata
tcaattcaagtaggaattgataagtccaataagaaaattattcataagcaatatcctagt
aaaacattacccgctctgtttattcctcccgtaaccagcaaacaaaaataa
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