Nitrosomonas sp. AL212: NAL212_1980
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Entry
NAL212_1980 CDS
T01443
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nit
Nitrosomonas sp. AL212
Pathway
nit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAL212_1980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nit03019
]
NAL212_1980
03400 DNA repair and recombination proteins [BR:
nit03400
]
NAL212_1980
Enzymes [BR:
nit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NAL212_1980
Messenger RNA biogenesis [BR:
nit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NAL212_1980
DNA repair and recombination proteins [BR:
nit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NAL212_1980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
IBB
Motif
Other DBs
NCBI-ProteinID:
ADZ26817
UniProt:
F9ZEI7
LinkDB
All DBs
Position
complement(1925594..1927549)
Genome browser
AA seq
651 aa
AA seq
DB search
MKINLPVAVPACRCSIMKVFMILRKAIYRRCKLQLCLDRVNQREFAAILFGMSEALNLLK
EVFGYPAFRGQQAEVIAHLAGGGDCLVLMPTGGGKSLCYQIPALLRNGVAIVVSPLIALM
HNQVTALHEIGVRAAVLNSSLSQQEAIRVEQKLLADEYDLLYVAPERLLTARFLNLMTRI
PIALFAIDEAHCVSQWGHDFRPEYIQLSILHERFPAIPRIALTATADMDTRKEIIERLGL
DLAKVFVSSFDRPNIRYQIIDKTNSRSQLLAFIQTEHPSDAGIVYCLSRKKVEEITLWLV
KQGLNAVAYHAGMSMHQRSLNQEKFLREESIIMVATIAFGMGIDKPNVRFVAHLDLPKSI
EGYYQETGRAGRDGQAANAWMAYGLGDVIQQRRMIEESEAQVKFKQGAARKLEAMLSLCE
TTTCRRIRMLSYFGERIDTAAGCGNCDICLNPPKVWDATVEVQKAMSCAYRTGQIFGAGH
LIDVLRGNLTDRVKEWHHDRISTFGIGKNLPEKTWRAIFRQIVALGLLTPDSEGHGALHL
TEASRAVLKGQQNVYLRQQTRTEQLSKKRHGDDLTPLDSTERYLWEQLRSWRAKTAKEHG
VPAYVIFHDATLHELVRLCPKTEDELSQVTGVGARKLDKYGVYLMQILRGG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaacttaccagtagctgtgcctgcatgccggtgtagtatcatgaaagtcttt
atgattcttagaaaagcaatttacagacgatgtaaattacaattatgccttgatcgggtt
aatcagcgggaatttgcagcaattctatttggaatgtccgaagcgcttaatttattgaag
gaagtttttggttatccggcttttcgcgggcagcaagcggaagtcattgcgcaccttgcc
ggtggaggcgattgcctggtgttgatgccaaccggtggtggcaagtcattgtgttatcaa
attccggcgttattacgcaatggtgttgctattgtcgtgtctcctcttattgctttgatg
cacaatcaagtcactgcattgcacgaaatcggggtacgcgccgcagtgctgaattcttca
ttatcccaacaagaagctattcgggttgagcagaagcttttagcggatgaatatgatttg
ctgtatgtggcgcctgagcgcttgttgactgcacggtttctgaatctgatgacacgtatt
ccgattgcgctgttcgcgattgatgaagcacactgtgtttcgcaatgggggcatgatttt
cgcccggaatacattcaattatcaattttacacgagcgttttcctgcaattccgcgtatt
gcattgacagcaaccgccgacatggatacgcgtaaagaaatcattgagcggcttgggttg
gatttagccaaggtatttgtctcaagttttgatcgcccgaacattcggtatcagattatc
gataaaactaacagtcgttcccaattgttggctttcatccagacggaacatccgtcggat
gctgggattgtatattgcctgtcacgtaaaaaggtggaagaaatcactctttggttggtg
aagcagggtttgaatgctgtggcctatcacgccggcatgagtatgcaccagcgaagcctg
aatcaggaaaaatttttacgcgaagagagcatcatcatggttgccacgattgcgttcggt
atgggaatcgataaacccaatgtgcgttttgtcgcgcatttggatttaccgaagagcatc
gagggctattatcaggaaaccggccgtgctggccgtgatggacaagcagccaatgcgtgg
atggcgtatggtcttggtgatgtcattcaacagcggcgtatgattgaagaatccgaggcg
caggtcaaatttaagcaaggcgctgcacgcaaactggaagccatgttgtcgttatgcgaa
acgactacttgccgtcgtattcgcatgctaagttatttcggtgaaaggattgacactgct
gcggggtgtggaaattgcgatatttgcttaaatccgcctaaagtttgggatgccaccgtg
gaggtacaaaaggcaatgtcgtgtgcttatcgcacggggcaaattttcggcgcaggtcac
ttaattgacgttttgcgcggcaacctgaccgatcgtgtaaaagaatggcatcacgacaga
atcagtacttttgggatcgggaaaaacctgcctgaaaaaacctggcgggcgatatttcgc
caaattgttgcgctgggtttgctgacgccggatagtgaaggacatggtgctttgcatctt
actgaagccagccgtgctgtacttaaagggcagcagaacgtatatttacgtcaacaaacc
agaactgagcaattatctaaaaagcgccatggcgatgatttaacacccttggattcaacc
gagcgctatttgtgggaacagttgcggtcatggcgggcaaagacagccaaagagcatggt
gttccggcttatgtgatttttcatgatgccacgttgcatgaattggtgcgtttatgcccg
aaaacagaagatgaattgagtcaagtgacaggtgtcggtgcgcgcaaactcgacaaatat
ggcgtttatttaatgcaaatactgcgcggcgggtaa
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