Nitrosomonas sp. AL212: NAL212_2139
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Entry
NAL212_2139 CDS
T01443
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nit
Nitrosomonas sp. AL212
Pathway
nit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NAL212_2139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nit03021
]
NAL212_2139
03400 DNA repair and recombination proteins [BR:
nit03400
]
NAL212_2139
Enzymes [BR:
nit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NAL212_2139
Transcription machinery [BR:
nit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NAL212_2139
DNA repair and recombination proteins [BR:
nit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NAL212_2139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADZ26971
LinkDB
All DBs
Position
complement(2109219..2113430)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVTHKEEFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVSHIWFLKSL
SSRLGMVLDMTLRDIERILYFEAYVVTDPGLTPLTRCQLLTEEDYLIKTEEYGDDFSASM
GAEGIRDLLSNLDIKAEIENLRREMDSTGSETKIKKISKRLKLLEAFNKSGIKPQWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFNKLELMGIASTIKAAKREVENETAVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEC
RTLMMSTNNVLSPANGEPIIVPSQDIVLGLYYTTREKMGARGEGMLFQDVSEVSRAYESR
NVELNARIKVRIREYDINADGERYEKITRYETTVGRTLLFEIFPPALPFSLLNKTLKKKE
ISKLINASFRRCGLRETVIFADKLMYAGFSYATRAGISICADDMLIPTQKSNIIAEAEQE
VKEIEGQYISGLVTQGERYNKVVDIWGRAGDQVAKAMMNQLGVEPVLDPSSGKIQLDETG
AQLTQESFNSIYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTEEDCNTDSGVAMKALVEGGEI
IEALRERILGRVVVNDVINPESQEVVFASGVLLDEDAVDLIESLGIDEVKVRTPLTCETR
YGLCAKCYGRDLGRGTPVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRTAVVSQVE
SKSSGTVHYSPTMRYVTNAQNELIAISRSGEIIIQDENGRERERHKASYGATLLVRDGEM
VKAGQILTTWDPHTRPIITEYTGKVRFENVEEGVTVAKQIDEVTGLSTLVVIDPKRRGVI
QSKGLRPLVKFLDDDGNEIKMLGSSQSVSITFQIGCIITVRDGQQVSVGEVLARIPQETS
KTRDITGGLPRVAELFEARAPKDAGMLAEVTGIVSFGKDTKGKQRLIITDLEEIVHEYLI
PKDKHVMAHDGQVVNKGEIIVDGPADPRDILRLQGVEALARYITDEVQDVYRLQGVRIND
KHIEVIVRQMLRRVQITNSGDSAFIPGEQVERADLLVENERLIAEKKMPATYEFMLLGIT
KASLSTDSFISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLVPAGTGLSFHSKRK
KQGKIPEIIAESDVSIDSVDSAV
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctagatttatttaaacaagttactcacaaagaagagtttgatgccata
aaaattggccttgcttctccagagaaaattcgctcttggtcttatggcgaagtaaaaaaa
cctgagacgattaattatcgtaccttcaaaccggagcgagatggtctgttttgtgccaag
atctttggtccagttaaggactatgaatgcttgtgtggaaaatataaacggctaaagcat
cgtggtgtcatctgcgagaaatgtggtgttgaagtaactttgtcaaaagtacgccgtgaa
cgtatggggcatatcgaactggcttcacctgtttcacatatctggttcttaaaatcccta
tcatcgcgtttgggtatggtattggatatgactttacgtgatattgaacgaatcctatat
tttgaagcttatgtagttactgatcctggcttgacgcccctaacgcgttgtcagttactg
actgaagaggattatttaataaaaacagaagaatatggagatgatttcagtgccagcatg
ggcgctgaaggcattcgtgatctattaagtaatctggatattaaagccgagattgagaac
ttgcggcgtgaaatggatagtactggatcggaaacaaagattaagaaaatttctaagcga
cttaaactgctggaggcatttaataagtcagggataaaaccacaatggatggttttgacc
gtgctgccagttctgccaccagatcttcgtcccctggtgccgctcgatggcggtcgtttt
gcgacttcggatttgaatgatttatatcgccgggttatcaatcgtaataatcgattaaaa
cgattattggagttaaaagcaccagaaattatcgttcgcaatgaaaagcgtatgctgcaa
gaggcggttgattcattactggataatggtcgtcggggtaaggcaatgactggtgctaat
aagagagcgcttaagtcattggcggatatgatcaaaggtaagggtgggcgtttccgccag
aacttgctaggtaaacgtgtggattattctggtcgatcagttatcgttgtcggacctcaa
ctcaagctccatcagtgtggattgcctaagaaaatggcactcgagttatttaaacctttt
attttcaataaactggagttaatgggaattgccagtaccatcaaggctgccaagcgcgaa
gttgagaatgaaactgcagtggtatgggatattctggaagatgtaattcgtgagcatcca
gttatgttaaatcgtgcaccaactctgcatcgattgggtattcaagcgtttgaaccagtt
ctggtcgagggtaaagcaattcaattgcatccattagtttgtgctgcatttaatgctgat
tttgacggtgaccaaatggctgttcacgtaccgctttcattagaagcacaaatggagtgc
agaacattaatgatgtctaccaataatgttttatccccagctaatggagaacccattatt
gtaccctctcaagatatcgtactcggtctttattatactactagggagaaaatgggagct
cggggtgaaggtatgctatttcaggatgtcagtgaagtctcacgtgcttatgaaagtagg
aatgtagaattaaatgcaagaattaaggtgagaatcagggaatatgacattaatgcggat
ggcgaacggtatgaaaaaattacacgttatgaaacaacagtaggaagaacattattattt
gaaatttttcctcctgcgcttccattctcattgctcaataaaacattaaaaaagaaagag
atatcaaaactgattaatgcaagttttagacgttgtggattgagggaaacagtgatcttt
gctgataagctcatgtatgcgggatttagttatgcaacgcgtgccggtatctctatttgt
gcggatgacatgttgataccaactcagaaaagcaacattattgctgaggcggaacaagaa
gtaaaagaaattgaagggcaatatatatcgggtttggtgacacaaggagagcgctataac
aaagtggtggatatttggggtagagcaggggatcaagttgccaaagctatgatgaatcag
cttggtgtagagccagtacttgacccgtctagcggaaagattcaacttgacgagacaggt
gcacagttaacgcaagaatcatttaattcaatctatatgatggcggattctggtgctcgt
ggttcagcggcacagatacgtcagttatcaggtatgcgcggattgatggcaaaacctgat
ggttcgattattgaaacaccaattacagctaacttccgtgaaggtttaaatgtcctacag
tattttatttcaacacacggtgccaggaagggattagcagatacggcattaaagactgcc
aactcaggttatttgactcgacgattagttgatgttactcaagatcttgtggttacagag
gaagattgtaacactgatagtggcgtagctatgaaagctttagtggaaggtggtgaaatt
attgaagcattacgcgagcgaattttaggtagagttgtagttaacgatgtaattaatccc
gagagtcaagaagtggtttttgcatcgggggtattgttggatgaagatgctgtagatttg
attgaatctttgggtattgatgaagtaaaagtccgtacaccacttacctgtgaaactcga
tatggtttatgtgcgaagtgttatggacgggatttggggcgtggtactccggtcaatgtg
ggcgaagcaataggagttattgccgctcaatcaattggtgaaccaggtacgcaattgaca
atgcgtacatttcatattggtggtgcagcctccagaactgcggtggtaagtcaggttgaa
agcaagtcaagtggcacagtacattattctccaacgatgaggtatgtgaccaatgctcaa
aatgaattaatcgctatttcacgaagcggtgaaatcattattcaagatgaaaatggacgc
gagcgtgaaagacataaagcttcttacggtgcaacattgctagtacgggatggtgaaatg
gttaaagcaggccagatattaaccacttgggatccgcatactcgccctataataactgaa
tatactgggaaggtgcgattcgaaaatgttgaagaaggggtcactgtagcgaaacaaatc
gatgaagttactggattgtcgacattagtagttattgatccaaaacgtcgaggagttata
caatcgaaaggtttacgtccactagtgaagttcttggatgatgatgggaatgaaataaag
atgttgggtagtagtcaatctgtgagcataacgttccagatcggttgtattatcacggtg
agggatggacaacaggtgagtgtaggcgaagtattggcaaggattccacaagagacttct
aaaacacgtgatattactggaggtttgccgcgcgtggcagagctatttgaagcaagggcg
ccaaaagatgcaggcatgttagctgaggttacgggcattgtttcttttggtaaggacacc
aaaggtaagcaaagactaattattactgatcttgaagaaattgtgcatgaatatttaatt
ccaaaagataaacacgtaatggcacatgacggacaagtagtgaataaaggtgaaattatt
gttgacggaccggcagatccacgtgacattttgcgtttacaaggggttgaagcattagcg
cgatatattactgatgaagtccaagatgtatatcgattgcaaggcgttaggattaatgac
aaacatattgaagttattgttcgtcaaatgctgaggcgagtgcaaattaccaattcgggt
gattcggcatttatcccgggagagcaggtagagcgtgccgatttactcgttgagaacgaa
cgattaattgccgaaaagaaaatgccagctacttatgaatttatgttgttaggtattaca
aaagcatcattatcgacggactcattcatttctgcagcctcatttcaagaaacaactcga
gtattgactgaagcggcaattatgggcaagaaagatgatttgcgcggattaaaagagaat
gttatcgttggcagattagttcctgctggtacgggattatcttttcacagtaagagaaaa
aagcaaggaaaaatacctgagattattgccgaatcagatgtctcaattgatagtgttgat
agtgctgtttag
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integrated database retrieval system
