KEGG   Nitrobacter sp. CN101: NvuCN101_02530
Entry
NvuCN101_02530    CDS       T12060                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
nitr  Nitrobacter sp. CN101
Pathway
nitr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nitr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NvuCN101_02530 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nitr03021]
    NvuCN101_02530 (rho)
   03019 Messenger RNA biogenesis [BR:nitr03019]
    NvuCN101_02530 (rho)
Transcription machinery [BR:nitr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     NvuCN101_02530 (rho)
Messenger RNA biogenesis [BR:nitr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     NvuCN101_02530 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: BFV61533
LinkDB
Position
complement(291342..292607)
AA seq 421 aa
MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
IDIARSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIEFLLDKLRNTKNNGEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaacttcaagacctcaaagccaagactccagctgaactcgtctcgttt
gcggaagagcttggggttgaaaatgccagcaccatgcgcaagcaggagttgatgttcgcg
attctgaagcagcttgccatccaggaaaccgatatcatcggcgagggtgtcgttgaggtg
ctctcggacggcttcggcttcctgcgctcgccggacgctaactatctgcctggtccggac
gatatttatgtttcgccatcgcagattcgccgcttcggcctgcgaaccggagataccatt
gaagggcatatccgcagccctaaagagggcgagcgctactttgcgttgttgaaagtcaac
acgctcaattttgaggatcctgagaagtccaagcacaaggtcaactttgacaacctgacg
cctttgttccccgatcagcggttccggcttgagctggaagatcccactcgtaaggatctg
tcggcgcgggttatcgatatcgtcgctccgatcggtaagggtcagcgcgccttgatcgtg
gcgccgccacggaccggcaagaccgtgctgatgcagaacatcgcgcactccatcaccgcc
aatcatcccgaatgctatctgatcgttcttctgatcgatgaacgtcccgaggaagtcacc
gacatgcaacgctcggtgaaaggcgaagtcgtgtcttccactttcgacgaaccggcggtg
cgccatgtccaggttgccgagatggtgatcgaaaaggccaagcgtctggtggaacacggt
cgcgacgtcgttatcctgctcgattcgatcacgcgtctgggccgcgcctacaacaccgtg
gtgccctcctccggcaaggtattgacaggcggcgtcgatgctaacgccttgcagcggcca
aagcggttcttcggcgcggcgcgcaacatcgaggaaggcggctcactgaccatcatcgcc
accgcgctggtcgataccggaagccgtatggacgaagtgatcttcgaagagttcaagggt
accggtaattcggagctaatcctagaccgcaaggtcgccgacaagcgaaccttcccggcg
atcgacatcgcccgctccgggacgcgcaaggaagagctgatcaccgatccgcaactgctc
aagaagatgtatgtgctgcggcgcatcctcaacccgatgggtaccatggatgcgatcgag
ttcctgctcgacaagctgcgtaacaccaagaacaacggtgagttcttcgagtcgatgaat
acttga

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