Candidatus Nitrosotenuis sp. DW1: DSQ19_01105
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Entry
DSQ19_01105 CDS
T07741
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niu03016
]
DSQ19_01105
Enzymes [BR:
niu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSQ19_01105
Transfer RNA biogenesis [BR:
niu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSQ19_01105
Prokaryotic type
tRNA splicing ligases
DSQ19_01105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
DUF3791
Motif
Other DBs
NCBI-ProteinID:
QLH09860
LinkDB
All DBs
Position
complement(190492..191877)
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AA seq
461 aa
AA seq
DB search
MKVPVRVFANEDLFGKMMSDRTIEQAINVSTLPGVQKNVIVLPDGHQGYGFPVGGVAIMD
AERGVISPGSVGYDINCGVRLIRTNLTESDVKPKLQELITDLFESIPVGMSKREGCIHLS
RSELDEVLVRGIGWLIDHGYATKEDAELCEEGGCIIGADPSKVSEEAHRRGAPQLGSLGS
GNHFLEVQKVDKIFDKEAAEVMGITNEGDITVLIHCGSRGLGHQICTDYLKVCEYSYKKY
GIKLPDRQLACVPNISEEGESYKKAMNCAFNYAWSNRQTITHWIRKSFERVFNRSESDLD
MKLVYDVAHNSAKVEKHVVDGEEKSVIVHRKGATRAFPAGRVEIPQKYRRIGQPTFIPGS
MGSASWILVGKPNSLDLTFGSTVHGAGRLMSRTAAHKNYNYKQVIEQLQKKGIFIKSMTR
YDVVEETPEVYKDVDTVATISHDLGIATKVARLVPLGVIKG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttcctgttagagtatttgcaaatgaagatctgtttgggaagatgatgtcggac
aggacaattgaacaggcaatcaatgtatctacactgcccggagtccagaaaaatgtcata
gtgttaccagatggtcatcagggatacggcttcccagtaggcggagtagcaataatggat
gcagagagaggagtgatcagccctggaagcgttgggtatgatatcaattgtggggtacgg
ttgatcaggaccaatctaactgaaagtgatgtaaagccaaaactacaggaactgataact
gatctttttgaatcaattccggttggaatgagtaaacgtgagggatgcattcatttgagc
agatcagagcttgatgaagtactggtacgaggtattgggtggttaattgatcatggctat
gcaaccaaagaagatgccgaactatgtgaggagggaggatgcataattggcgcagatcct
agcaaggtctcagaagaggcgcatagaaggggggcacctcagcttgggagccttggatct
gggaaccattttcttgaagtacaaaaagtggacaaaatatttgataaagaagctgcagaa
gtaatgggaataacaaatgaaggagacataacagttctaattcactgtggctcacgaggc
cttgggcatcaaatatgtacagattatttgaaggtgtgtgagtatagttataaaaaatat
ggaataaagttacccgacaggcagcttgcctgcgttcccaatatttctgaagaaggtgaa
tcttacaaaaaggcaatgaattgtgcctttaattacgcatggagtaacaggcagacaatt
actcattggataagaaaatcatttgagcgagtctttaaccggtcagagtcggatcttgac
atgaaattggtatacgacgttgctcataacagcgccaaagtagaaaaacacgttgtagat
ggagaagaaaaatcagtgattgttcacagaaaaggagcgacacgagcatttccagcaggc
agagttgagattcctcaaaaatacagaaggattggccaaccgacatttattccaggctcc
atggggtctgcaagttggatacttgtaggaaagccaaattctctggatctaacctttggt
tcaacggtgcatggcgcaggacggcttatgtcaagaactgcggctcacaaaaattacaac
tacaaacaggtaatagaacagttgcaaaaaaaaggaattttcataaaatcaatgacaaga
tatgatgtggtagaagaaacccccgaagtttacaaagatgttgacaccgttgcaacgatt
tcacatgatctagggattgcaaccaaagtagcaagactagttccattaggcgtcataaag
ggatga
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