KEGG   Candidatus Nitrosotenuis sp. DW1: DSQ19_01380
Entry
DSQ19_01380       CDS       T07741                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
niu  Candidatus Nitrosotenuis sp. DW1
Pathway
niu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:niu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DSQ19_01380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:niu03019]
    DSQ19_01380
Messenger RNA biogenesis [BR:niu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     DSQ19_01380
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     DSQ19_01380
SSDB
Motif
Pfam: ECR1_N Prok-RING_1 Zf_1st_IFT121 Cas12f1-like_TNB
Other DBs
NCBI-ProteinID: QLH08309
UniProt: A0A7D5R9L3
LinkDB
Position
complement(234518..235063)
AA seq 181 aa
MEDFVVPGDTLGSIEEMEAGNNTFDDGSKIRASTIGIANIDKKNKIAQVENGKQLAIPKK
GDIVIGTVAAVLSSMIAVAIHYINGKPNSSGVECICQNMDRRRIIARVNDVITLKIESHL
NGTIHATIDEPELGVLFTKCNICAGSVVPLRDRVKCPNCGFVEDRKISTNFEKSDFLKLR
D
NT seq 546 nt   +upstreamnt  +downstreamnt
atggaagactttgtcgtacctggcgatacgcttggctctattgaagagatggaggcagga
aacaacacctttgatgacggcagtaagatcagggcatctacaattggaattgcaaatata
gataaaaaaaacaagattgcgcaggtggaaaatggaaaacagcttgcaataccaaaaaaa
ggcgacattgtcataggtacagtggcagcagtattgtcatccatgattgcagtagccata
cattacataaacggcaaaccaaactcatcaggagtggaatgcatttgccagaacatggac
agaaggagaataattgccagagtaaacgatgtaattacactaaaaattgaaagtcaccta
aacggtacaatacatgcaacaattgatgagcctgaactaggggtattatttacaaaatgt
aacatttgtgctggaagcgtagttccgctaagagacagagtcaagtgcccaaactgcgga
tttgttgaggaccgcaagatatcaaccaattttgaaaagagcgattttctgaagctaaga
gattaa

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