Candidatus Nitrosotenuis sp. DW1: DSQ19_01380
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Entry
DSQ19_01380 CDS
T07741
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Pathway
niu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSQ19_01380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niu03019
]
DSQ19_01380
Messenger RNA biogenesis [BR:
niu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DSQ19_01380
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DSQ19_01380
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Prok-RING_1
Zf_1st_IFT121
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
QLH08309
UniProt:
A0A7D5R9L3
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All DBs
Position
complement(234518..235063)
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AA seq
181 aa
AA seq
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MEDFVVPGDTLGSIEEMEAGNNTFDDGSKIRASTIGIANIDKKNKIAQVENGKQLAIPKK
GDIVIGTVAAVLSSMIAVAIHYINGKPNSSGVECICQNMDRRRIIARVNDVITLKIESHL
NGTIHATIDEPELGVLFTKCNICAGSVVPLRDRVKCPNCGFVEDRKISTNFEKSDFLKLR
D
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggaagactttgtcgtacctggcgatacgcttggctctattgaagagatggaggcagga
aacaacacctttgatgacggcagtaagatcagggcatctacaattggaattgcaaatata
gataaaaaaaacaagattgcgcaggtggaaaatggaaaacagcttgcaataccaaaaaaa
ggcgacattgtcataggtacagtggcagcagtattgtcatccatgattgcagtagccata
cattacataaacggcaaaccaaactcatcaggagtggaatgcatttgccagaacatggac
agaaggagaataattgccagagtaaacgatgtaattacactaaaaattgaaagtcaccta
aacggtacaatacatgcaacaattgatgagcctgaactaggggtattatttacaaaatgt
aacatttgtgctggaagcgtagttccgctaagagacagagtcaagtgcccaaactgcgga
tttgttgaggaccgcaagatatcaaccaattttgaaaagagcgattttctgaagctaaga
gattaa
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