Candidatus Nitrosotenuis sp. DW1: DSQ19_02245
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Entry
DSQ19_02245 CDS
T07741
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Pathway
niu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSQ19_02245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niu03019
]
DSQ19_02245
Messenger RNA biogenesis [BR:
niu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DSQ19_02245
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DSQ19_02245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
ECR1_N_2
KH_6
RRP40_S1
KH_2
KH-I_KHDC4-BBP
RRP4_S1
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QLH08458
UniProt:
A0A7D5MAU3
LinkDB
All DBs
Position
396710..397390
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AA seq
226 aa
AA seq
DB search
MDDIKRKYVIPGDVITTGPYRAEENVNLVGDKIIATTVGISEIYDSGVRVIPLTGMYVPR
IDDFIIGIVKSHTSLSWELDMRSCYPGILPAQDVFGRDFNPKVDELTSRLKKGDLVAARI
ANFDRSRDPLITIGDRDLGKIEEGELVKISPSKVPRLIGKRGSMIQTIENATKALITIGQ
NGYIVVSCEEPEGLLKALDAIRMIDEQAHVPNLTEKIQEMLGSNSE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggatgatattaaaagaaaatatgtaattcctggcgatgtaataacaactggtccgtac
agggcagaagaaaatgttaatctcgtaggtgacaaaatcattgcgaccaccgtcggtatt
tctgaaatttatgatagcggcgttagggtcattccgttgactggaatgtatgttccaaga
atcgatgacttcataattggcatagtaaaatctcacacctcgctttcgtgggagcttgac
atgcgttcgtgttatcctggtattctgcctgcccaggatgtttttggcagggattttaac
ccaaaagttgacgagctgacatcgcgtctcaagaagggagacctggttgcggcaaggatt
gcaaactttgacagatcacgcgacccgctaatcacgataggtgatagagaccttgggaaa
atcgaggaaggcgagctagtcaaaatttcgccaagcaaagttccaagacttattggaaaa
cgcggctctatgattcaaacaatagaaaatgccaccaaggcgctgattacaattggacaa
aacggttacatcgtagtttcatgcgaggagccagagggattattaaaggcacttgatgcc
ataagaatgattgacgaacaggcacatgttccaaatctgactgaaaaaatacaagaaatg
ttaggatcaaatagtgaataa
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