Candidatus Nitrosotenuis sp. DW1: DSQ19_03555
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Entry
DSQ19_03555 CDS
T07741
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Pathway
niu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DSQ19_03555 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niu03021
]
DSQ19_03555 (tfb)
Transcription machinery [BR:
niu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
DSQ19_03555 (tfb)
Prokaryotic type
Archaeal type
TFB
DSQ19_03555 (tfb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Ribosomal_S27
Cyclin_N
Zn_ribbon_3
RPW8
HTH_AsnC-type
HEF_HK
Zn_Ribbon_1
HTH_3
RB_B
Motif
Other DBs
NCBI-ProteinID:
QLH08683
LinkDB
All DBs
Position
623803..624711
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AA seq
302 aa
AA seq
DB search
MVKSSKKDRCPRCAQGSVVTDTNTGENFCGKCGYVLNEENVESGPEWRSFSKEEGENRTR
TGTPTSLAMHDMGLATIIGQADKDATGKPLSSSMRSTIERLRTWDSRSQVHEPVDRNFRQ
AFSELDRLKDKLAVGDAVVEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRT
LKDIGSASNIKRKDIARCYRLLLRELGLKMPVVDPIKCVARIASKAELSEKTKREAAKIL
KTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKLAL
NL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaagtagtaaaaaggatcgctgcccgcgatgtgcacagggctcagttgtcacc
gatacaaacactggagaaaatttttgcggaaaatgtggttatgtgctcaatgaagaaaac
gtagagtctgggcctgagtggcgttcattttcaaaagaggagggagaaaaccgcacaagg
actgggactccaacctcgcttgcaatgcatgacatggggcttgcaactataatcggtcag
gcagacaaggatgccactggtaagccactgtcttcgtctatgcgaagcacgattgaacga
ctcagaacttgggatagccgaagccaggtacatgagcctgtggatagaaattttagacaa
gcattttcagaactggatagattaaaggataaacttgcagtgggtgacgctgttgtggaa
aaggcagcatacatttaccgcaaagcacttgaaaaaggactagtccgaggacgttcaatt
tctgcccttattgcatctgcattgtatgctgcatgccgagacaccgaaaccccaagaacg
ttaaaggacattggaagtgcaagtaatatcaaaagaaaagacattgcacgctgttatcga
ttgctattgagagaattgggtttgaagatgccagtagttgatccgataaaatgtgttgca
agaatagcaagcaaggcagagctatccgaaaagacaaaacgagaagcggcaaaaattctc
aaaactgcagaagaaaataagatttctgcaggaaaggatcctatggggcttgcagcagcc
gcactttatgttgcgtgtgtgactaatggtgaaaacaaaacacaacgcgacgttgcagaa
gcagccggtgtgactgaggtgacaatcagaaaccgttacaagggactcaaactggcatta
aacctctaa
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