Candidatus Nitrosotenuis sp. DW1: DSQ19_04050
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Entry
DSQ19_04050 CDS
T07741
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Pathway
niu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DSQ19_04050 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niu03021
]
DSQ19_04050 (tfb)
Transcription machinery [BR:
niu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
DSQ19_04050 (tfb)
Prokaryotic type
Archaeal type
TFB
DSQ19_04050 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
HTH_AsnC-type
RB_B
HTH_11
HEF_HK
HTH_3
Motif
Other DBs
NCBI-ProteinID:
QLH09927
LinkDB
All DBs
Position
complement(714112..715026)
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AA seq
304 aa
AA seq
DB search
MVVQTLNKEGQCRRCNKGMMMTDDITGERFCNSCGFVIVERIDDSGPERHLFSKDERDDK
TRTGAPTSLAMHDMGLATIIGHTNRDATGKPLSSSMKMSMNRLRTWDSRSQAHVQADKNF
RHAFTQLDKLRDKLALSDAVVEKTAYIYRKALAKGLVRGRSIEGLLAAAVYAACRDVETP
RTLNDVSEAINVKRKDVSRNYRLLVHELELKMPVVDPISCMSKIASKVGLNEKTKRRAFT
ILEEASAMQITAGKDPMGLAAAALYISCIKCKENVSQKEIALAAGVTEVTIRNRYKGLRE
SLKL
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggttgtacaaactttgaacaaagaaggacaatgtagacgttgtaataaagggatgatg
atgacagacgacatcaccggtgagagattttgcaatagttgcggttttgtaattgttgaa
cgcatcgatgactctggtcctgaacgtcatttgttttcaaaagacgagcgcgatgacaaa
acaaggactggtgcaccaacatcgcttgcgatgcacgacatggggcttgccacaataata
ggccataccaacagggacgctactggaaagccactttcctcatccatgaagatgagcatg
aaccggctcagaacatgggatagtaggagtcaggcccatgtacaggcagacaagaatttc
agacatgcgtttacgcagttggataaactaagggacaaacttgccctatccgatgcagta
gttgaaaaaacagcttacatttatcgaaaagcccttgcaaagggcttggttaggggcagg
tcaatcgaaggacttcttgcagcagcagtgtatgcggcgtgcagggacgtagagacgcca
aggaccctaaacgacgtttcggaggcaatcaacgtaaagagaaaagacgtttcaagaaac
tacaggttgctagtgcatgaacttgaactgaaaatgccagtggtggatccaattagctgc
atgtccaaaatagcaagcaaggtaggattgaacgaaaaaacaaaacgaagggcatttaca
attcttgaggaggcaagtgccatgcagattactgcaggaaaggatccgatgggacttgca
gctgctgcactttacatttcatgcataaaatgcaaggaaaatgtttcacaaaaagaaatc
gcacttgcggcaggagtaaccgaggttacgatccgaaacaggtacaagggattaagagag
tcattaaaactataa
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