Candidatus Nitrosotenuis sp. DW1: DSQ19_06695
Help
Entry
DSQ19_06695 CDS
T07741
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Pathway
niu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSQ19_06695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niu03019
]
DSQ19_06695
03009 Ribosome biogenesis [BR:
niu03009
]
DSQ19_06695
Enzymes [BR:
niu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSQ19_06695
Messenger RNA biogenesis [BR:
niu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSQ19_06695
Ribosome biogenesis [BR:
niu03009
]
Prokaryotic type
rRNA helicases
DSQ19_06695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
Helicase_C_2
Flavi_DEAD
AAA_30
HEM4
Rhodanese
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QLH09194
LinkDB
All DBs
Position
1155089..1156687
Genome browser
AA seq
532 aa
AA seq
DB search
MTTTFEQLGIKKSIVDGLKEIGFEAPFPIQEATIPVLLSGRDVIGQAHTGTGKTAAYAIS
MLQNVEPRRGIQGLILAPTRELAVQITTEFKKFAKHAGIRIVSIYGGQGMGVQLDALRHG
VEIVVATPGRLIDHLKRGSIDLKDIKYVVLDEADTMLDMGFIDDIKFILDLTPVNKVMSL
FSATMPPAILRLAEDYLNNPKQFLLSADDLSGEGIDQSFLVIKDREKLKYLIDFIKENKK
SQSIVFCSTKNRTREVARDLRENGFNAVAIEGDMSQHQRENSMSRFRRGQADVLVATDVA
ARGIDVPEVALVVNYDVPNQEMVYFHRIGRTARAGAKGRAITLVSYSSIGDFNLIKRQIK
VTMTDLNEKLGIQVSIPDPLKRDAGSRRTFGRGGGGRSYGGGGRSYGGGGRSSYGGGGRS
YGGGGRSSYGGGGRSYGGGGRSSYGGGGRSYGSRSDEERSGDKPRSYGGSGGGRSYGSKS
DERGSSDKPRSYGGSGGGRSYGSKSDERGSSDKSSRSQMHHAPKGSAHRRRW
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacaacattcgaacaactaggaattaaaaaatcaatagtagatggactaaaggaa
attggctttgaagcgccgtttccaatacaagaggcaactataccagtattactttcaggc
cgagatgtaattggccaagctcacacaggaactggcaaaactgcagcatatgcaatttca
atgctgcaaaatgtagagccacgaaggggaattcaggggctgattcttgccccaacaagg
gagcttgcagtccagatcacaactgaatttaagaaatttgcaaaacatgcagggattaga
atcgtatccatttacggcggacaggggatgggcgttcagcttgacgcgttaaggcacgga
gttgaaattgtcgttgccacgccgggaagactaattgaccacctaaaacgcggctcaatt
gatctcaaggacataaagtatgtcgtgttagacgaggcagacacaatgcttgacatggga
tttattgacgacatcaaattcatcttggatctcacgccggtaaacaaggtaatgtcactc
ttttcagctacaatgccgcctgcaatactcagactggcagaagactatctgaacaatcca
aagcaatttctcctttcagcagatgatcttagtggagagggaatagaccagtcgtttttg
gtgataaaagacagagagaagctaaagtatctaatcgactttattaaagaaaataaaaaa
tcacaatcaattgtcttttgctctacaaaaaacagaacaagagaagtagcaagagacctg
cgcgagaacggctttaacgcagtagctatcgaaggcgacatgtcacaacaccaaagagaa
aactccatgtcacgcttcagaagagggcaggcagacgtacttgtcgccacagatgttgcg
gcaagaggaatagacgtgccagaagtcgcactagtagtcaactatgatgtcccaaatcaa
gaaatggtttactttcacagaattggaaggaccgcacgcgcaggtgccaagggaagggca
atcacactagtgtcctattcatcaattggcgatttcaatttaattaaaagacaaatcaaa
gtaacgatgacagacctgaatgaaaagctcggaatacaggtaagcataccagacccactg
aaacgagatgccggatcacgtagaacgttcggcagaggtggagggggcagaagctatggc
ggaggaggtcgaagttatggcggtggcggaagatcaagctatggcggaggaggtcgaagt
tatggcggtggcggaagatcaagctatggcggaggaggtcgaagttatggcggtggcgga
agatcaagctatggcggaggaggtcgaagttatggcagcagatcagatgaagaaagaagt
ggcgataaaccaagaagctatggcggaagcggaggtggcagaagctatggtagtaaatca
gacgaaagaggcagtagtgacaaaccaagaagctatggcggaagcggaggtggcagaagc
tatggtagtaaatcagacgaaagaggcagtagtgataagagcagtagaagccagatgcat
catgcgccaaaagggtctgcacacaggcgacgatggtaa
DBGET
integrated database retrieval system
