Candidatus Nitrosotenuis sp. DW1: DSQ19_06815
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Entry
DSQ19_06815 CDS
T07741
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niu03016
]
DSQ19_06815
Enzymes [BR:
niu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
DSQ19_06815
Transfer RNA biogenesis [BR:
niu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DSQ19_06815
Prokaryotic type
DSQ19_06815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
SAM_DrpA
Motif
Other DBs
NCBI-ProteinID:
QLH09215
UniProt:
A0A7D5RIN8
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Position
complement(1176258..1177454)
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AA seq
398 aa
AA seq
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MIPKIDSDIGITVYTTKYHGCGGKIKVRNDDFKVSEVLSQKTLDSVTQSEGFAIYKLKKS
GIDTNHALETIFRKFGVHLKALGLKDSSAVTEQFVCSLGQNKSVPNYADGKISLEKIGFL
KKPLSAKDMVGNKFVITVTDPERDFADFAESDRIFNFYGYQRFGSRRPVTHLIGRALVQR
RFDDAITLLLSFTSEYDSDENTKIRKIMSDPSSYPEALKVLPHKMDLERIALQEMIEHKD
PQRAFQKLPLSIRRLFVDAYQSFIFNLTVCKAFEYGEELFLPQDGDVCYGKNANLGKYEM
DPNQQLAIPLVGHSYFKKTRFDLHISKILQDEQVNPKDFFFKEMQEISSEGGFRTASIHC
TDFLIEKNIASFTLQRGSFATMMMREIMKPVDPLKAGF
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgatcccaaaaatagactctgacattggaatcacagtgtacacaaccaagtatcatggg
tgcggaggaaaaatcaaggtacgcaatgatgatttcaaagtatctgaggtgctgtcgcaa
aaaacacttgactctgtcactcaaagtgaggggtttgccatatacaaactaaaaaaatcc
ggaatcgacacaaaccatgcacttgaaacaattttcagaaagttcggagtccacctaaag
gcgctgggcttgaaggactcttctgcagtaactgagcagtttgtgtgctcgcttgggcaa
aacaaatccgtcccgaactatgctgacggcaaaatctcacttgagaaaattgggtttttg
aaaaaaccgctttctgcaaaagacatggtcggaaacaagtttgtcatcacggtgactgat
ccagagcgagactttgctgattttgccgagtctgacagaatttttaatttttacgggtac
caaagatttggctcaaggcggcccgtgacccacctgattggaagggcgctagtccagcgg
agatttgacgacgcaataacactcctgctttcatttacatccgaatatgactcagacgag
aacaccaagattagaaagatcatgtcagacccgtccagttatccagaagctctaaaagtt
ctgccgcacaagatggatctggaaagaatagcactgcaagaaatgatagagcacaaagac
ccgcaaagggcatttcaaaaacttcccctgtcaattaggcgcctttttgtggatgcgtac
cagtcgtttattttcaacctgactgtctgcaaggcatttgaatatggtgaggaactcttc
ctgccgcaagacggggacgtgtgctacggcaaaaacgccaatttgggaaaatacgagatg
gatccaaaccagcagcttgcgatacctcttgtgggacactcttattttaaaaaaactaga
tttgatctgcacatttcaaaaattctccaagatgagcaggttaacccaaaggactttttc
ttcaaggaaatgcaggagataagctcagaaggtgggtttagaactgcatctattcactgc
acggattttttaattgaaaagaacattgccagctttaccttgcagcgaggatcgtttgca
actatgatgatgcgcgagataatgaagcccgtcgaccccctcaaggctggcttttaa
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