Candidatus Nitrosotenuis sp. DW1: DSQ19_08145
Help
Entry
DSQ19_08145 CDS
T07741
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niu03016
]
DSQ19_08145
Enzymes [BR:
niu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSQ19_08145
Transfer RNA biogenesis [BR:
niu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSQ19_08145
Prokaryotic type
tRNA splicing ligases
DSQ19_08145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3492
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
QLH09446
LinkDB
All DBs
Position
complement(1412225..1413673)
Genome browser
AA seq
482 aa
AA seq
DB search
MSSITPKKVGNMQYRIEADSSKGMKVPVTIYADESLMQKMMTDRTILQATNVSTIPGILG
HAVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRTNLTEKDVRPKLKE
IVTDLFNSIPSGVGSQGAVKLNYSELDEVLVRGVNWAIEHGYGTSDDADVCEENGQIRNA
DPNKVSNTARKRGAPQLGSLGSGNHFLEVQKVEKIYDEEAAKRMGIQEGNVTVLIHCGSR
GFGHQICSDYLRVSEQALQKYDIHLPDRELACVPNSSEEGESYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFKQSESDLDMGLVYDVAHNIAKVEKHKIDGRERSVVVHRKGATRAFPA
NREEIPLKYRDLGQPVLIPGSMGTGSWILLGKPNSMDLSFGSTAHGAGRMMSRSKARRDF
TEDQVKKSLSDKGIFIKSLTRDGVVEETPEAYKDVDAVVNVSHELGIATKVAKLIPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaattactccaaaaaaagttggaaacatgcagtatagaatcgaagctgactcg
agcaagggcatgaaggtgccagttacgatatatgcagacgagtcgttaatgcaaaaaatg
atgaccgatagaaccatactacaggcaacaaacgtttccacaattcccggaatcttggga
cacgcggtggttctgcctgacgggcatgaaggatacggatttccagtcgggggagtggcc
gcaatggatgcagaagagggcatgattagtcccggcggtgtgggatatgacataaactgc
ggagtgaggctgcttcgcaccaacctgacagaaaaagatgtcagaccaaagcttaaagaa
attgtaactgatctttttaattcgattccatctggtgtgggatcgcagggagctgtaaaa
ctaaactattctgaactagacgaggtgctggtgcggggtgtcaactgggcaatcgagcac
ggatacggtacgtcagacgatgcagacgtctgcgaggaaaacgggcagataagaaacgcc
gatccaaacaaggtctcaaacaccgctcgaaaaaggggcgcaccacaattaggcagtctg
ggctctggcaatcattttttagaagttcaaaaggttgaaaaaatttacgacgaggaggca
gcaaagaggatgggcatacaggagggaaacgtgacagtcctgattcactgcggctctcgc
ggatttgggcaccagatatgcagcgattatcttagggtgtctgagcaggcactgcaaaaa
tacgacattcatctgcctgacagggaactggcatgcgttccaaactcgtcagaagaaggc
gagtcataccgaaaggcaatgtttgcagctttaaactttgcgtggagcaaccgccagatg
atcacccactggacaagaaaatcatttgagcgggtgttcaagcagtccgagtccgacctt
gacatgggactagtctatgacgtggcgcacaacattgcaaaggttgagaaacacaaaatc
gacggacgcgaaaggtctgttgtggtgcacagaaaaggtgcaactcgtgcgtttcctgca
aacagagaagagattccgctaaagtaccgtgatttaggacaacccgttttgattcctggc
tccatgggaaccggaagctggattctgctgggcaagccaaactcgatggacctaagcttt
ggctcgactgcgcacggggcaggaagaatgatgtcccgttccaaggcaaggcgcgacttt
acagaggaccaggtcaaaaaatcactcagtgataaaggaattttcatcaagtcattaaca
agggacggggtggtagaggagactccggaggcatacaaggatgtggacgcagtggtaaac
gtatcgcacgagcttggaattgcaacaaaggtagcaaagctcatccccatcggcgtgata
aagggatga
DBGET
integrated database retrieval system
