Candidatus Nitrosotenuis sp. DW1: DSQ19_10420
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Entry
DSQ19_10420 CDS
T07741
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
niu
Candidatus Nitrosotenuis sp. DW1
Brite
KEGG Orthology (KO) [BR:
niu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niu03016
]
DSQ19_10420 (thpR)
Enzymes [BR:
niu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DSQ19_10420 (thpR)
Transfer RNA biogenesis [BR:
niu03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DSQ19_10420 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
Acb1
HVSL
TiaS_FLD
MVP_shoulder
Motif
Other DBs
NCBI-ProteinID:
QLH09820
UniProt:
A0A7D5MCH5
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All DBs
Position
1816028..1816567
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AA seq
179 aa
AA seq
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MRTFVAVEITDQNILNLIKNLQSDLRIDAKPVESQNMHFTLLFLGEISDDMAQRVQNELK
TIQFDSFDISFEGVGAFPKPKFPRVVWIGVKDGAEELVELAKTVEKKLAPLGFKSDKEFK
PHITVLRIKNKIGDITDELVKYSNEKFGSQKISEIKFKKSILTPSGPIYSDLQEIKASR
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacctttgtcgcagtagagataacagatcaaaatattttaaatttgataaagaat
ctgcaatccgatcttagaatagatgcaaagccagtagagtcgcaaaacatgcactttaca
ttattgtttcttggtgaaatatcagatgacatggcacaaagagtacaaaacgaactaaaa
accatccagttcgattcgttcgatattagttttgagggagtaggagcgtttccaaagcca
aaattcccaagagttgtgtggattggagtaaaagatggtgcagaggagctcgtagaactt
gcaaaaaccgtagaaaaaaaactagctcctcttggatttaaaagtgataaagagttcaaa
ccacacattacagtattaagaattaaaaataaaattggcgacattacagacgaattggta
aaatattccaatgaaaaatttggctcacagaaaatttcagaaattaaattcaaaaaaagc
attcttacgccaagcggtccaatctattctgatttacaggagataaaggcgtcaagatga
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