Niveibacterium microcysteis: JY500_03325
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Entry
JY500_03325 CDS
T07082
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
niv
Niveibacterium microcysteis
Pathway
niv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
niv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JY500_03325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niv03021
]
JY500_03325 (rpoC)
03400 DNA repair and recombination proteins [BR:
niv03400
]
JY500_03325 (rpoC)
Enzymes [BR:
niv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JY500_03325 (rpoC)
Transcription machinery [BR:
niv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JY500_03325 (rpoC)
DNA repair and recombination proteins [BR:
niv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JY500_03325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QSI77697
UniProt:
A0ABX7M7G8
LinkDB
All DBs
Position
720813..725018
Genome browser
AA seq
1401 aa
AA seq
DB search
MKSLLADLFKQSLPNEEEFDAITIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASVVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEGFVVVDPGMTPLTRGQLLTEEDFIAKTEEYGDEFTA
LMGAEAVRELLRSIDLPREIERLRSELETTGSEAKIKKIAKRLKVLEAFTQSGIRPDWMI
MEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PQLKLHQCGLPKLMALELFKPFIFNKLELRGYATTIKQAKKMVESQEPMVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLSSNNVLSPANGEPIIVPSQDVVLGLYYATREAVNVPGEGMAFIDVAEAKRAYE
SGQASLHARVFIRVREVELTPEGEKREKITRYNTTIGRAILSEILPAGLPFSVIDKALKK
KEISKLINHAFRRCGLKETVVFADRLMQFGFRLATRAGLSIAVRDMLVPTSKQDIIAAAA
HEVKEIAQQYTSGLVTDGERYNKVVDIWGRAGDQVAKAMMEQLGTEPVINHLGKEVRQES
LNAIYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTALGFTMRAIIEGGEVVEPLRDR
ILGRTAADDVVNPDTQETAIYAGTLLDEDACDLIDALGVDEVRVRTPLTCETRYGMCAKC
YGRDLGRGNLVNSGEAIGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVASSVEAKSAGVV
RYAGNTRYVTTAKDEKVVIARSAEVVVTDEMGRERERHKIPYGATLLVEDGGAVKAGAQL
ATWDPHTRPIITEYSGTIKFENVEEGATVAKQIDEVTGLSTLVVIDAKRRGQSATKGVRP
QVKLINEAGEEVKIAGTDHAVTITFQVGSLITVKDGQQVSVGDVLARIPQESAKTRDITG
GLPRVAELFEARSPKDAGMLADVTGTLSFGKDTKGKQRLVITEPDGTVHEFLIPKDKHVM
VHDGQVVQRGELIVDGPADPHDILRLKGVEELARYIIEEVQDVYRLQGVKINDKHIEVIV
RQMLRRVVITDPGDSKFIREEQVERSEVLDENDKLIAEGRLPAQYEYMLLGITKASLSTD
SFISAASFQETTRVLTEAAILGKRDELRGLKENVIVGRLIPAGTGLAYHRARRAQSGATF
DLPPSGSFNDEPAAVEGAQSE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctgctcgctgatctgttcaaacagagcctgccgaacgaggaagagttcgac
gcgatcaccattggtctcgcgtcgccggagaagatccgctcctggtccttcggtgaagtg
aagaagccggagaccatcaactaccggacgttcaagccggaacgcgatggtctgttctgc
gccaagatctttggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctc
aagcaccgcggtgtgatctgcgaaaagtgcggcgtggaagtcacgcttgccaaggttcgc
cgtgagcgcatgggtcacatcgagctggcctcggtggtcgcccatatctggttcctgaag
agcctgccgagccgcctcggcatggtgctcgacatgaccctgcgcgatatcgaacgcgtg
ctgtacttcgaaggcttcgtggtcgtcgatcccggcatgaccccgctgacgcgcggccag
ctgctgactgaagaagacttcatcgcgaagaccgaagagtacggtgacgagttcaccgcg
ctgatgggtgccgaagccgtgcgcgaactgctgcgctcgatcgacctgccgcgcgaaatc
gagcgcctgcgttcggagctcgaaaccacaggctcggaagccaagatcaagaagatcgcc
aagcgcctcaaggtgctcgaggccttcacgcagtcgggcatccgccccgactggatgatc
atggaagtgctgccggtgctgccgccggatctgcgcccactggtgcccctggatggtggc
cgcttcgcgacctccgacctgaacgacctctaccgccgcgtgatcaaccggaacaaccgc
ctgaagcgtctgctcgagctcaaggcgccggacatcatcgtgcgcaacgaaaagcgcatg
ctgcaggaggcggtcgactcgctgctcgacaacggccgtcgcggtaaggcgatgaccggc
gcgaacaagcgtccgctcaagtcgctcgccgacatgatcaagggtaagggcggtcgcttc
cgtcagaacctgctcggtaagcgcgtcgactactcgggccgttcggtgattaccgtgggc
ccgcagctgaagttgcatcagtgcggcctgcccaagctgatggcgctcgagctgttcaag
cccttcatcttcaacaagcttgagctgcgtggctatgccaccaccatcaagcaggcgaag
aagatggtcgaaagccaggaaccgatggtgtgggacatcctcgaagaggtgatccgcgag
catccggtcatgctgaaccgtgcgccgacgctgcaccgccttggtatccaggcctttgaa
ccgacgctgattgaaggcaaggcgatccaactgcacccgctcgtctgtgcggcgttcaac
gccgacttcgacggtgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagatg
gaagcccgcacgctgatgctgtcttccaacaacgtgctgtcgccggcgaacggcgagccg
atcatcgtgccgtcgcaagacgtcgtgctgggcttgtattacgccactcgcgaagcggtg
aacgtgccgggcgaaggcatggccttcatcgatgtcgccgaggcaaagcgtgcctacgag
tcgggtcaggcttcgctgcacgctcgcgtgttcatccgtgtgcgtgaagtcgagctgacg
cccgaaggcgaaaagcgcgagaagatcacgcgctacaacaccaccatcggtcgcgcgatc
ctctccgagattctgcctgccggtctgccgttctcggtgatcgacaaggcgctgaagaag
aaagagatctcgaagctgatcaaccacgccttccgccgttgcggcctgaaggagaccgtg
gtgttcgccgaccgcctgatgcagttcggcttccgcctcgcgacgcgtgccggtctgtcg
attgcggtgcgtgacatgctggtgccgacctcgaagcaggacatcattgccgccgctgcg
cacgaagtgaaggaaatcgcgcagcagtacacctcgggtctcgtgaccgacggcgagcgc
tacaacaaggtcgttgatatctggggtcgtgcgggtgaccaggtcgccaaggcgatgatg
gagcagttgggtaccgaaccggtgatcaaccacctcggcaaggaagtccgccaggaatcg
ctcaacgcgatctacatgatggccgactcgggcgcgcggggttccgcggctcagatccgt
cagctttccggtatgcgcggcctgatggcgaagccggacggctcgattatcgaaacgccg
atcacgacgaacttccgcgaaggtctgaacgttctgcagtacttcatctccacccacggt
gctcgtaagggtctcgcggatacggcgttgaagacggcgaactccggctacctgacgcgt
cgtctggtcgacgtgacgcaggacctcgtggtcaccgaagacgattgcggtaccgcgctc
ggcttcacgatgcgcgcgatcatcgaaggcggtgaagttgttgagccgctgcgcgaccgc
attctgggccgcaccgccgctgacgacgtcgtgaatccggatacgcaggagactgcaatc
tacgccggcacgctgctcgacgaagatgcgtgcgacctgatcgacgcgcttggcgtggac
gaagtgcgcgtgcgtacgccgctcacctgcgaaacccgctacggcatgtgcgccaagtgc
tacggccgtgacctcggccgcggcaatctggtgaactccggtgaagcgatcggcgttatc
gccgcgcagtcgatcggtgagccgggcacgcagctgacgatgcgtaccttccacgtcggt
ggtgccgcgtcgcgagctgccgttgccagctcggtcgaagccaagtcggcgggtgtggtc
cgctacgcgggcaacacccgttacgtgacgaccgccaaggacgagaaggtcgtgatcgcc
cgctcggctgaggttgtcgtgaccgacgaaatgggccgcgagcgcgagcgccacaagatc
ccgtacggtgccacgctgttggttgaagatggcggcgcggtgaaggccggtgcacaactg
gctacctgggatccgcacacccgtccgatcatcaccgagtactcgggcaccatcaagttc
gagaacgtcgaagaaggtgcgacggttgccaagcagatcgacgaagtcaccggtctgtcc
acgctggtcgtcatcgacgccaagcgccgtggccagtcggcgaccaagggcgtgcgtccg
caggtcaagctgatcaacgaagcgggcgaagaagtgaagatcgccggcaccgatcatgca
gtgaccattaccttccaggtcggctcgctgatcacggtgaaggacggtcagcaggtttca
gtcggtgacgtgctggcgcgtatcccgcaggaatcggcgaagacgcgtgacattaccggt
ggtctgccgcgtgtggcggaactgttcgaagcgcgttcgccgaaggatgccggcatgctg
gcggatgtcaccggtacgctgtcgttcggcaaggacacgaagggcaagcagcgtctggtg
atcaccgagcctgacggcacggtgcacgagttcctgatcccgaaggacaagcacgtgatg
gtgcacgacggccaggtggtgcagcgtggcgagttgatcgtggacggcccggccgatccg
cacgacatcctgcgtctcaagggtgtcgaagaactcgcgcgctacatcatcgaggaagtg
caggacgtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtt
cgccagatgctgcgtcgcgtggtcatcaccgatccgggcgatagcaagttcatccgcgaa
gagcaggtcgagcgttcggaagtgctggacgagaacgacaagctcatcgcggagggtcgc
ctgccggcgcagtacgagtacatgctgctgggtatcacgaaggcctcgttgtcgaccgat
tcgttcatctccgcggcttccttccaggaaaccacgcgcgtgctgaccgaagcggcgatc
ctgggcaagcgcgacgaactgcgcggcctgaaggaaaacgtcatcgtcggtcgtctgatc
ccggccggtactggccttgcctaccaccgtgctcgccgcgcgcagtccggcgcgaccttt
gatctgccgccgtcgggcagtttcaatgacgagccggcggcggtcgaaggcgcgcagtcg
gaataa
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integrated database retrieval system
