KEGG   Candidatus Nitrosopumilus sp. SW: Nisw_00015
Entry
Nisw_00015        CDS       T06175                                 
Name
(GenBank) DNA-directed RNA polymerase subunit K
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
niw  Candidatus Nitrosopumilus sp. SW
Pathway
niw03020  RNA polymerase
niw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:niw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Nisw_00015
  09124 Replication and repair
   03420 Nucleotide excision repair
    Nisw_00015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:niw03021]
    Nisw_00015
   03400 DNA repair and recombination proteins [BR:niw03400]
    Nisw_00015
Transcription machinery [BR:niw03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     Nisw_00015
  RNA polymerase III system
   RNA polymerase III
     Nisw_00015
  RNA polymerase I system
   RNA polymerase I
     Nisw_00015
DNA repair and recombination proteins [BR:niw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Nisw_00015
SSDB
Motif
Pfam: RNA_pol_Rpb6 Cauli_AT
Other DBs
NCBI-ProteinID: QDI88026
UniProt: A0A514L833
LinkDB
Position
complement(673..1182)
AA seq 169 aa
MSDANNTEVVEVAEDEIPATEEIAEIEVETNAGLNKALDTYRKLIEKKVDAEPLTEKEQD
DLEKRIKEIEEREIVETIEEHEPVEIPCEKNKITIGPPTLTRFEKARIMGARALQLSLGA
PPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDYQNIPIDYFEK
NT seq 510 nt   +upstreamnt  +downstreamnt
ttgtctgatgctaataatactgaggttgtagaagtcgccgaagatgaaattcctgcaaca
gaagaaattgcagaaattgaagttgagaccaatgcaggactaaacaaagcacttgatact
tatcgaaaactaattgagaaaaaagttgatgcagaaccattaaccgaaaaagaacaagat
gatcttgaaaaaagaattaaagaaattgaagaaagagaaattgttgaaacaatagaagaa
catgaaccagtagagattccttgtgaaaagaataagattacaattggtccaccaacacta
actagatttgaaaaggcaagaattatgggtgcaagggcattgcagttgtctttaggagca
ccaccatttatcccaattccaaaaactgcaagaatatcattggatatatcaatggaagaa
ttagaacaaagagtgatcccaatcacaatcagaagagttcttccaaatggagattatcaa
aatattcctatcgactattttgaaaaatga

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