Candidatus Nitrosopumilus sp. SW: Nisw_01490
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Entry
Nisw_01490 CDS
T06175
Name
(GenBank) collagen-like protein
Organism
niw
Candidatus Nitrosopumilus sp. SW
Brite
Glycosaminoglycan binding proteins [BR:
niw00536
]
Heparan sulfate / Haparin
Extracellular matrix molecules
Nisw_01490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
QDI88297
UniProt:
A0A514L8X1
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Position
complement(233064..234686)
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AA seq
540 aa
AA seq
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MSSQSKLEIQGQAPFKQSGVYEAQIAIVGSRPSDEQIKSKQFTSLWRGNFHLRVKDGIFS
ETIGSPENPIPSSVLELETIWIVVTDLFSSLHSVFDVPLSRPKPQSTTQTSTETRTISET
PKQKRTTKTSTGYPGPQGAPGDKGATGPQGPEGDKGPQGPPGQVGPPGDKGPEGPQGPPG
DKGPTGDKGPSGDKGIAGDKGLTGDKGVTGDKGDKGDKGVPGPPGEKGDKGVTGPIGDKG
PTGLKGPTGDKGEKGPTGPPGDKGLSGLRGAPGDKGEKGPQGPPGEKGLTGPIGTPGEKG
PTGQAGVQGEKGIQGGPGPIGEKGPIGPIGEKGPIGPPGPLGDKGLTGPAGPPGDKGPIG
PPGPIGEKGVRGTEGPIGDKGPQGPQGPAGAKGLTGVPGPQGEKGDKGPLGPQGEKGQTG
ATGPPGDKGPQGPQGSQGERGTTGPSGEKGPQGPQGIQGPQGERGPTGPIGSIGEQGPRG
EQGPLGPAGPRGPPGPPGEKGPSGGMSSEQKALFKELLEILTEKNVISTEEQIKLMSYLY
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatctcagtctaaattagaaatccaaggccaggcaccatttaaacagtcaggtgtg
tatgaagcccaaatagcaattgttggtagtaggccttcagatgaacaaattaaatctaaa
caatttacttctctttggcggggtaatttccatcttagagttaaagatggaattttttct
gaaactattggttctcctgaaaatccaatcccctcatcagtattagaattagaaacaatt
tggatagtcgttacagatctattttcctcattacattctgtttttgatgttccattatca
agaccaaaacctcaatcaactacacaaacatcaactgaaactagaacaatttctgaaact
ccaaaacaaaaacgtacaactaaaacaagtactggttatccaggtccacaaggtgctcca
ggtgacaaaggtgctactggtccacaaggtccagaaggtgacaaaggtccacaaggtccg
cctggacaagtaggtcctccgggtgacaaaggtcccgaaggtccacaaggtcctccgggt
gacaaaggtccaactggagataaaggtccatctggtgacaaaggaattgctggagacaaa
ggactaactggagacaaaggagtcactggtgacaaaggtgacaaaggtgacaaaggtgtt
cctggtccacctggcgaaaaaggtgacaaaggtgtaactggtccaattggtgacaaaggt
ccaactggactaaaaggtccaactggcgataaaggagaaaaaggtccaacaggacctcct
ggcgataaaggattatctggattaagaggtgcccctggcgataaaggagaaaaaggtcca
caaggtcctccaggagaaaaaggattaacaggtcctattggaactccgggagaaaaaggc
ccaacaggacaagcaggtgttcaaggagaaaaaggaattcaaggtggtccgggtcctatc
ggcgaaaaaggtccaataggtcctatcggcgaaaaaggcccaataggtccaccaggccca
cttggtgacaaaggattaacaggtccagcaggtcctccaggtgacaaaggtccaataggt
cctccgggtcctatcggcgaaaaaggtgttagaggaactgaaggtcctatcggtgacaaa
ggtccacaaggtccacaaggtccagctggtgcaaaaggattaacaggcgttcctggtcct
caaggagaaaaaggtgacaaaggtccgttaggtcctcaaggagaaaaaggacaaacaggc
gcaacaggtcctccaggtgacaaaggtccacaaggtccacaaggttcacaaggtgaaaga
ggaacaacaggtccctctggagaaaaaggtccacaaggtccacaaggaattcaaggccca
caaggtgaaagaggcccaacaggtccaataggttctatcggagaacaaggtccacgtgga
gaacaaggtccgttaggtccagcaggtccaagaggtcctccaggtcctccaggagaaaaa
ggtccatcaggtggaatgtcatctgaacaaaaagcattgttcaaagaattgttagaaata
ctaacagagaaaaatgtcattagtactgaagaacaaattaaactaatgagttatctttac
tag
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