Candidatus Nitrosopumilus sp. SW: Nisw_01790
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Entry
Nisw_01790 CDS
T06175
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Nisw_01790 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niw03021
]
Nisw_01790 (tfb)
Transcription machinery [BR:
niw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Nisw_01790 (tfb)
Prokaryotic type
Archaeal type
TFB
Nisw_01790 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Ribosomal_S27
HTH_AsnC-type
zf-CCHC_5
Cyclin_N
RPW8
HEF_HK
Zn_ribbon_3
HTH_3
Zn_Ribbon_1
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QDI88352
LinkDB
All DBs
Position
283135..284043
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AA seq
302 aa
AA seq
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MVKTVNPKDRCPRCGKGTLVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKSR
AGVPTSLAMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQ
AFSELDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRT
LKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDPIKCISRIASKAGLSEKTKRKATKIL
QTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVAL
NL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaacagtaaatccaaaggacagatgtccaagatgtggaaaaggtacactagta
acagatgcaaatactggtgaaaatttttgtggcaaatgtggatttgtaattacagacaaa
gtagaagagtcaggtccagaatggagatcattttcaaatgaaggtgaaaacaaaagtaga
gcaggagttccaacatcacttgccatgcacgacatgggattggcaactgtaatcaatcct
caaaatagagatgcaacaggtaaaccactaacagcttctatgaaaagcacaattgagaga
ttaagaacatgggatagtagaagtcaagttcatgaaccagttgatagaaactttagacaa
gcatttagtgagttagataggctaaaagacaaacttgcagtaggagatgcagttattgaa
aaagcagcttacatttacagaaaagcattagagaaaggattagtcagaggacgttccatt
tcagctttgattgcatcagcattatatgcagcatgtcgtgatactgaaacaccaagaaca
ttaaaagacattggacaagcaagcaacatcaaaagaaaagacattgcaagatgttacaga
ttattgttaagagaattaaatttgaaaatgccagtagtagatccaatcaaatgtatttca
agaattgcaagtaaagcaggtctatcagaaaaaacaaaaagaaaggcaacaaagatttta
caaactgcagaagaaaataaaatttcagcaggtaaagatccaatgggattagctgctgca
gcattatatgttgcatgtgtaacaaatggtgaaaacaaaacacagagagatgtagcagaa
gctgcaggagttacagaagtgacaattagaaatagatacaaaggcttgaaagtagcctta
aatctctag
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