Candidatus Nitrosopumilus sp. SW: Nisw_02650
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Entry
Nisw_02650 CDS
T06175
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nisw_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niw03019
]
Nisw_02650
Messenger RNA biogenesis [BR:
niw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Nisw_02650
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Nisw_02650
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF7513
Motif
Other DBs
NCBI-ProteinID:
QDI88507
UniProt:
A0A514L9I4
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All DBs
Position
complement(425505..426323)
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AA seq
272 aa
AA seq
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MASHTVIDELKRNQILDLLEQGKRVDGRALDEAREISIETNAIPKANGSARVRLGDTEVV
CGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRESHMI
DVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDETPTLVE
GEEVAVPITTIPVSVTMAKIGKHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG
FTMEEIVQCGEISVRVGAKIREKLKAAQQAGQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacatactgttattgatgaattaaagagaaatcaaattcttgatttgttagaa
caaggaaaaagagttgatggaagagctcttgatgaagcaagagaaatttcaattgaaacc
aatgcaattccaaaagcaaacggttctgcaagagttcgattaggagatactgaagttgtt
tgcggagtaaaaatccaacctgataggcctttccctgatactggtgacaaaggtcttttc
atttgtactgctgaattattacccctttcacatcctacagttgaaacaggacctccagga
cctgaagtaattgaactagctagagttgtggatagaggaatcagagaaagtcacatgatt
gatgtttctcaattagttattgaaaaagacaagtctgtgattggtgtttttgcagataat
gttgttgttgattatgatggtaatctatttgatgcatgttcttatgctgcaactgctgca
ctactctcatctaaaagtccaaaatggaattgggtagatgaaactcctacactagttgaa
ggtgaagaggttgccgttccaattactaccatcccagtatctgtaactatggctaaaatt
ggaaaacatatcatagttgatcctaacggtgatgaatgggcaagtatggatgcaagaatt
acaattactagtgattctgatggaaatatctgtgctttacagaagggtggtgatgatgga
ttcactatggaagaaattgtccaatgtggtgaaatctcagtcagagtaggcgcaaaaata
agagaaaaattaaaagcagctcagcaggcaggtcaataa
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