Candidatus Nitrosopumilus sp. SW: Nisw_02655
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Entry
Nisw_02655 CDS
T06175
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nisw_02655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niw03019
]
Nisw_02655
Messenger RNA biogenesis [BR:
niw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Nisw_02655
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Nisw_02655
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PEPCK_GTP
Motif
Other DBs
NCBI-ProteinID:
QDI88508
LinkDB
All DBs
Position
complement(426327..427061)
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AA seq
244 aa
AA seq
DB search
MGGREATMVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPR
DVHPKHMSDTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPR
TAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEED
QAGQADMPIGYMPNLEKITLLQLDGVLTPEEYKKCVQVGVDGCKLVYELQKKALNDKYFG
NKGE
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgggtggacgagaagcaacaatggtccttatggacgaaaatggaaaacgttgtgatgga
cgtacagtggacgaaccacgtcgaattatgattaaagctggtggactcaaaaatgcagat
ggttcatcttacattgaatttggagataacaaaattctagttggagtttttggtccaaga
gatgttcacccaaaacacatgtctgacactgacactggtattttgagagttagatatcac
atggaaccattctctgttggtgagagaaagaacccagctccttcaagaagagagattgaa
atttccaaagttatcaaagaagcattagagcctgcagttatgttagataaattcccaaga
actgcagttgatgtatttatcgaagttttacaagcagatggtggaactagatgtgccgca
cttactgcagcatctgttgcattagctgatgcaggtattccaatgagagacatggttgca
gcaattgcagcaggaaaagttgcagacactgtaattcttgatgttaacaatgaagaagat
caagcaggtcaagcagacatgccaattggttatatgccaaatcttgaaaaaataacacta
ttgcaattagatggcgtactcactcctgaagaatacaaaaaatgtgttcaagttggagtg
gatggatgcaaactagtttatgaattacaaaagaaagcactcaacgacaaatattttgga
aataaaggagagtag
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