Candidatus Nitrosopumilus sp. SW: Nisw_03165
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Entry
Nisw_03165 CDS
T06175
Name
(GenBank) DNA-directed RNA polymerase subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Nisw_03165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niw03021
]
Nisw_03165
Enzymes [BR:
niw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Nisw_03165
Transcription machinery [BR:
niw03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Nisw_03165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QDI88602
UniProt:
A0A514L9S3
LinkDB
All DBs
Position
complement(503666..507457)
Genome browser
AA seq
1263 aa
AA seq
DB search
MSIQAVKAIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQK
CLTCGNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLNVFKTI
KEKHAAYTVISQKRIPEQIIEKAKKAKECPHCGKTQYELIFTKPTIFVEKTEIGEHRLLP
ITIRERFSQIIDEDLELLSYDPITARPEWFVLQAFPVPPVTVRPSIILETGIRSEDDLTH
KMVDIIRVNQRLKESKDAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHHRSGRPLKT
LTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEAVAMKLTIPEIVTEWN
IERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVERHLADGDIV
MFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAI
LLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTTLSVQEFSNLAMLGGYTDPLPKP
ATKTKDGPAYTGKQLFSLFLPKDFNYVITSKWSKGTKGQAKDVVIKNGELISGVIDKSSI
GAEEPESVLHRIAKDYGNAVGKSFLNSILIMVKQFITHYGFSYGYGDLIVPDKDKQQILD
DIQETYDIVDDLTDQFNKGTLKLTRGMRPEEALEAYIVNELGKARDKAGSTANDCLPADN
AGKIMATTGARGSSLNVGQMAGALGQQSRRGNRLHDGYNNRALTHYQEHDNNPDAHGFVK
SNYREGLSALEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHG
HIVQFLYGEDGIDVQKSDHGEAFNPSRLIESQKIVDSGKKATKDEIETLAKKYTKTFNPR
LTSLVTETLLNSELSKDGIEAVCKKGLLLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRT
FHFAGIKERNVTLGLPRLIELVDARKKPVTPTMDIYLDEESKKSREKAIEVARNVLQTKV
SALIADSETDYATEIKLILSENRLKERGCSIAEVEAALSSNKKFKMETTGELITLKLVEE
SDTATVIAIRNKVLNTTVKGVPDIERVTLVQKDDEWVIQTTGSNVAKVLEVKGIDKRNVR
TNNVFEIAGTLGIEAARNALINELNSTLEDQGLEVDNRYIMLVADLMCSRGYMQQIGRHG
IAGTKDSVLARAAFEITVPTIAHAALGGEIEQLKGITENVIVGSNIPIGSGTVDLYMQVS
KKK
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgtccattcaagcagtaaaagcaatcgacggaattagattctctgtttggtctccaact
gaaatcagaaaatattctgttgcagaaatcactgctccagaaacctatgatgaggatgga
atgcctgttcaaggaggtttgatggatggcagactaggaacattagagcctggacaaaaa
tgcctaacctgtggaaatactgcagcaagatgtcctggacactttggacatttggaatta
gcagaaccagttttacacattgcatttattgataatatctacaaactgttacaatcaaca
tgtcgttcttgtgctagactcaaagttccgcaagaagatcttaacgttttcaaaactatc
aaagaaaaacatgcagcttatactgtaatttctcaaaaacgcattccagaacaaattatt
gaaaaagcaaagaaagcaaaagaatgtcctcattgcggtaaaacacaatacgaactaata
ttcacaaaaccaactatctttgtagaaaaaacagaaatcggagaacacagattacttcca
attacaattagagaaagattctcacaaatcattgatgaagatctagaactattatcctat
gatccgattactgcaagacctgaatggtttgtattacaagcattccctgttccaccagta
actgtaagaccttcaattattttagaaactggaattagatcagaagacgacttgactcac
aaaatggtagatatcatcagagttaatcagagactaaaagaaagtaaagatgcaggaact
cctcctcttatcgttcaagacttggtagatctattacaatatcatacaaccacatacttt
gataacgaggtatctggaatcccacaagctcatcatcgttctggacgtcctctcaaaacc
ttaactcaaaggctcaaaggaaaagaaggaagattcagaggttcactatctggaaagaga
gttgacttttcaagtagaactgtaatctcacctgatcctaatttagacttgagtgaggtt
ggtgttccagaagcagttgccatgaaactaaccattcctgaaattgttacagaatggaat
attgagagaatgagaaaacttgtaattaatggacctgagaaattcccaggtgtaaactat
atcgttagaccagatggtgtaaagattagacttgatttcgtagaagatcgttctacaatt
gctgaaacccttgaaattggatacttggtagaaaggcaccttgcagatggtgacattgtc
atgttcaacagacaaccatcacttcaccaaatgtcaattatggcacattatgtacgtgta
cttccaggaaaaacattcagactccatccatcagtttgtcctccgtataacgcagacttt
gatggtgatgagatgaaccttcatgttcctcaaagtgaggaagcaagagcagaagcaatt
ctcttgatgagagttcaagatcaattaatctcaccaagatatggtggcccaattattggt
gcactaagagactttgtaactggtgcatatcttctaactaaagatgatacaacattatca
gttcaagaattctcaaaccttgcaatgcttggtggatatacagatcctttgccaaaacct
gcaactaaaactaaagatggtccagcttatactggcaaacaactattctcgttattccta
ccaaaagacttcaactatgtcattacatcaaagtggtcaaagggaaccaaaggccaagca
aaagatgttgtaattaaaaacggtgaattaatcagcggcgtaattgataaatcttcaatt
ggtgcagaagaacctgaaagtgtacttcacagaattgcaaaagattatggtaatgctgta
ggaaaaagtttcctcaactctattctcatcatggtaaaacaattcatcactcactatggt
ttcagttatggttatggcgaccttatcgtacctgataaagacaaacaacagattctcgat
gacattcaagaaacttatgatatagtagatgacttgactgatcaattcaacaaaggtaca
ttgaaactaacaagaggtatgagacctgaagaagcactagaagcatacattgtaaatgaa
ttaggtaaagcaagagacaaagcaggctccactgcaaatgattgtcttccagcagataat
gcaggaaaaataatggctaccactggtgcaagaggttcatcacttaacgtaggtcagatg
gccggagcacttggacaacagtcaagaagaggtaacagactacatgacggttacaacaac
agagcattaacccattatcaagaacatgacaataatccagacgcacatggatttgtaaaa
tccaattatagagaaggtctatctgcacttgaattcttcttccacgcaatgggaggtcgt
gaaggacttgtagatactgcagttagaacacaacaaagtggttacatgcagcgtagatta
atcaacgcattagaacacattagattagaatatgatggaacagttagagatcctcacgga
cacattgtacaattcctttatggtgaagatggaattgatgtgcaaaagagtgatcatggt
gaagcatttaaccctagtagattaattgaatctcaaaaaattgttgactctggtaaaaag
gcaacaaaagacgaaattgaaacactagccaaaaaatacacaaagacattcaatcctaga
ttaacttctcttgtaactgagacattactaaattcagaattaagtaaagatggtattgaa
gcagtatgtaagaagggattgctactttacaacaaagccaaagtagaaccaggacaagca
gtaggaattatcactgcacaatcaattggtgaacctggtactcagatgaccttaagaaca
ttccactttgcaggaattaaagaaagaaacgttacattgggtcttccaagattaattgaa
cttgttgatgcaagaaagaaaccagtaacaccaactatggatatctatcttgatgaggaa
tcaaagaaatcaagagaaaaagcaattgaagttgcaagaaatgttttgcaaaccaaagta
agtgctttgattgcagacagtgaaactgattatgcaactgaaattaaactaattttaagt
gaaaatagactcaaagaaagaggctgttctattgcagaagtagaagcagcattgtcttct
aacaagaaattcaagatggagacaactggtgaactaatcactctaaaactagttgaggaa
tctgatactgcaacagtaattgcaattagaaacaaggttctcaacactactgtcaagggc
gtacctgacattgaacgtgtaacacttgtccaaaaagatgatgagtgggttatccaaaca
actggttctaatgttgccaaagtcttggaggttaaaggaattgataagagaaacgttaga
acaaacaacgtctttgaaattgcaggaacacttggtattgaagctgcaagaaatgcatta
atcaatgaacttaacagcactctggaagaccaaggacttgaagttgacaacagatacatc
atgttagtagccgatttgatgtgttctcgtggttacatgcaacaaattggaagacacgga
attgctggaactaaagatagtgtcttggcaagagcagcatttgagattaccgttccaaca
attgcacatgctgcacttggcggagaaattgaacaactcaaaggtattactgaaaacgta
attgttggaagcaacattccaattggaagtggaactgttgacttgtacatgcaagtaagc
aagaagaaataa
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