Candidatus Nitrosopumilus sp. SW: Nisw_03170
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Entry
Nisw_03170 CDS
T06175
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Nisw_03170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niw03021
]
Nisw_03170
Enzymes [BR:
niw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Nisw_03170
Transcription machinery [BR:
niw03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Nisw_03170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF7245
FYVE_2
MRNIP
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
QDI88603
LinkDB
All DBs
Position
complement(507457..510804)
Genome browser
AA seq
1115 aa
AA seq
DB search
MADPSTKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQL
GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVP
VMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVG
GNIVHKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIAA
AVSLVDELQDELEGSFEKAGDVPTAKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPENRKEKAQFLGEAACKLLELKLGWIKPDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNV
PSEEIVEKLYDLGTVHFFDAKEDLKKDGTRIFVDGRLIGYYKDGEQLAESLRDLRRNSKI
HPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTD
LLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNT
YESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVVAVL
PFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKG
ERAYRLLEEDGVVAAEAPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSET
GVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGILGILAKAEDLPYTASGM
SPDVLINPHAFPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEKMDEVREVMDAHGFEY
SGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGG
GLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKYVCRVCGD
KAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIKEKL
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggcagatccttcaaccaaacgttggccagtaattcaagacatcttgaagagagaaggt
attgcacgtcaacatctaaactcatttgatgaatttttagagagaggattacaaagtata
atcaacgaagttggtcagattgatattgaaaatgctgaatatccttacaaaattcaacta
ggtaaagttaaacttcaacaaccaagaatgatggagcttgatggttctattacacatatc
actcctgcagaagctagattgagaaatgtgtcttactctgcacctgtaatgatggaagca
agtgttgttgaagatgggaaaatactggaatcaagatttgtacacattggtgatgtccca
gttatggcaaaatcaaatgcatgtatcttacataatttctctactcaaaaattagttgaa
cacggcgaagatccaaatgatcctggtggttactttatcatcaatggttctgagagagtc
attgttggattagaggatctctcttacaacaaaattatagttgacagagagacagttggt
ggaaacattgtccataaagccaaagtatattcttccattgttggttatcgtgcaaaatta
gaacttgtcatgaaaaatgacggattaattgttgccagaattccaggttctccagttgac
attccagtagttactttgatgagagcacttggattagaatctgatagagagattgcagcc
gcagtttctttggtagatgaactccaagatgaattagaaggctcttttgaaaaagcagga
gatgttccaactgcaaaagatgctattgtttacatcagtaagagaattgctccgggaatg
ctagaggaattccagattaaacgtgctgaaactttacttgattggggtctgttacctcac
ttgggaaaacatcctgaaaacagaaaagaaaaagcacaattcttaggagaagcagcttgt
aaattattagaactaaaacttggttggattaaacctgatgacaaagaccactatggaaac
aaagtcattaaattcgcaggacagatgcttgcagacttgtttagaactgcatttagaaat
cttgttcgtgatatgaaataccaactagaacgttctggacaaaaacgtggaattaatgca
gtagctgctgccatccgtccaggaattattactgataaattaaacaatgcaattgccaca
ggaaactggggtagaggtagagtaggtgttactcaactacttgacagaacaaactatctt
tcaacaatcagtcaccttagaagaattcaatctccacttagtagaactcagccaaacttt
gaagcaagagatttgcatgcaacacactttggaagaatttgtccaagtgaaactcctgaa
ggttcaaactgtggtcttgtaaagaatctggcattatctggaatcatttctgtaaacgtt
ccatctgaagaaattgtagagaaactctatgatcttggaactgttcacttctttgatgca
aaagaagatttgaagaaagatggaactagaatctttgttgatggtagactaattggatat
tacaaagatggtgaacaactagcagaatcccttagagacttgagaagaaactcaaagatt
catccacatgtgggtgtatcatttcataaatctgaaattgaaggttctacaagaagactt
tatgttaattgtaatgcaggacgtgtcttaagaccgttaatcataatcaaagataacaaa
ccattacttactgctgatttactagataaaatttcaaagaaactcatctcatggactgat
cttttgagaatgggtgtcttagaaatgattgacgcaaatgaagaagagaactgctatgta
acactagatgaaaaagacacaaagaaacacactcaccttgaagttttcccacccgcaatc
cttggagcaggtgcatcaatcattccatatcctgaacacaatcaatctccaagaaacaca
tacgaatctgcaatggcaaaacagagtttaggattctcaacacctatgatgaataccagt
acctatgttagacaacactttatgctatatcctcaagttccaattgttaatacaaaagca
atgaaacttttgggattggaagacagacctgcaggtcagaattgtgtagttgcagtattg
ccatttgatggttacaacattgaagatgcaattgttcttagtaaagcatcagttgataga
ggtcttggaagaacattcttctttagaatttatgatgctgaagcaaaacaatatcctggt
ggaatgcgtgatgcgtttgaaattccaaatgctgaagataacatccgaggctacaaagga
gaacgtgcatacagattactggaagaagacggtgttgttgcagcagaagcaccagttaaa
ggtggagatatcttaattggaaaaactagtcctccaagattcatggaagaatatagagag
tttgaatcatctggaccttacagacgggatacatcaattggtgttagaccctcagaaact
ggagttgttgatactgtagttatgactcaatcaaacgaaggtggaaagatgtacaagatt
agagcaagagatatgagaattccagagattggtgataaatttgcatcaagacatggacaa
aaaggaattttaggaattttagctaaagcagaagacttgccatatactgcaagtggaatg
tctcctgatgttttgattaatccacacgccttcccatctagaatgacagtaggtatgatg
atggaatctatctgtggaaaatctgccgcattacgtggaaagagatttgatggttctgca
tttgttggagaaaagatggatgaagtaagagaagtaatggatgcacatggctttgaatat
tctggtaaagaaataatgtatgatggaagaactggaaagtcattcccagttgaggtattc
attggagttgtatattatcaaaaactgcaccacatggttgcagacaagattcatgcaaga
gcacgtggacaagttcagatgttaactaaacaaccaacagaaggaagagcaagaggcggt
ggtcttagattcggtgaaatggagagagactgtttgattgcttatggtgcttctatgatt
cttaaagacagattacttgacgaatctgataaatctgatatctttgtttgtgagagatgt
ggtcttgtagcttatcatgatgttaaacaaagaaaatatgtttgtagagtctgtggtgac
aaagccaaagtctcatctgtttcagttgcatatgcctttaaactactcttacaagagatg
cagagtctcaatgttgcaccaagattgttaatcaaggagaaactataa
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