Candidatus Nitrosopumilus sp. SW: Nisw_06070
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Entry
Nisw_06070 CDS
T06175
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nisw_06070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niw03019
]
Nisw_06070
Messenger RNA biogenesis [BR:
niw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Nisw_06070
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Nisw_06070
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
QDI89120
UniProt:
A0A514LB90
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All DBs
Position
complement(1002912..1003463)
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AA seq
183 aa
AA seq
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MSENATYPGEKIASIEEYEAGYNAFDDGDMVRAATIGQKDIDKTTRTANIKHPKDLSIPK
VGDIVIGTIAAVMSSMIAVSIDYINGNPTTSKVECVCSTRNIRKRNVALVNDIAKLKILN
HLNGTIHATIDEPNLGILFTKCRKCGGKVVPMRDAIKCTECSWIDERKLSTDFGKSDFIK
LRE
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaatgcaacatatccaggcgagaaaatagcatcaattgaagaatatgaggcc
gggtacaatgcttttgatgatggagacatggtaagagcagcaaccattggacaaaaggac
attgataaaactactagaactgcaaatatcaaacatccaaaggatctatcaataccaaag
gtaggagacattgtcattggaacaattgcagcagtaatgtcatccatgattgcagtctca
attgattacattaatggaaatccaaccacatctaaagttgagtgtgtatgttcaacaaga
aacattcgaaaaagaaatgttgcattagtaaatgacatagcaaaattaaaaattttaaat
catctaaacggtacaattcatgcaactattgatgaaccaaatttaggaatactatttaca
aaatgtcgcaaatgtggtggaaaagtagtacctatgcgagatgcaataaaatgtacagag
tgttcatggattgatgaaagaaaactttctacagactttggtaaaagcgatttcattaaa
ctgagagagtaa
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