Candidatus Nitrosopumilus sp. SW: Nisw_06725
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Entry
Nisw_06725 CDS
T06175
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
niw
Candidatus Nitrosopumilus sp. SW
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niw03016
]
Nisw_06725
Enzymes [BR:
niw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nisw_06725
Transfer RNA biogenesis [BR:
niw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nisw_06725
Prokaryotic type
tRNA splicing ligases
Nisw_06725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
DUF3492
GAPS4b_N
Motif
Other DBs
NCBI-ProteinID:
QDI89239
LinkDB
All DBs
Position
1114542..1115990
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AA seq
482 aa
AA seq
DB search
MSSITPRKIVENQYQIDADSSLGMRVPVKIYANEALLEKMLTDRTIMQARNVSSIPGIVG
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLTEDLVRSKLKD
IVTDLFSSIPSGVGSKGAVKLSHSELDEVLVNGVNWAIDHGYGSTNDSDVCEENGQIKNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEIQKVAEIHDEQAAEKMGIKEGTITVLVHCGSR
GFGHQVCSDYLRVAEQAMSKYNITLPDRELACVPNTSEEGESYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFNQSESDLDMKLVYDVAHNIAKVEKHKVNGEERKLVVHRKGATRAFPA
NREEIPSKYRHLGQPVLVPGSMGTASWILLGQPNSMDLSFGSTAHGAGRTMSRSKARKNY
TENDVKKSLNDKGIFIKALTRDGVVEETPQAYKDVDSVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctataactccaagaaaaattgtagagaatcaataccaaattgatgcagattct
agtttgggaatgagggttccagtcaaaatttacgccaatgaagcattactggaaaaaatg
cttactgataggactatcatgcaagcaagaaacgtctcctctattcctggaattgtagga
cacagtgttgttttgcctgacggacatgaaggatatggttttcctgtaggtggtgttgct
gccatggatgctgaagaaggaatgatcagtccaggtggtgttggttatgacattaattgt
ggagtgagactgttgcgctcaaatctaactgaagacttggttcgctctaagctaaaagat
attgtaactgatcttttcagttcaattccttctggtgtgggctctaagggtgcagtaaaa
ctaagtcactctgaacttgatgaagtgttagttaacggagtaaactgggcaattgatcat
ggatatggttcaacaaatgattcagatgtctgtgaagaaaacggacagataaaaaatgca
gaccctaacaaagtttcagataaagcaagaaagagaggtgcacctcagcttggtagttta
ggttctggaaatcattttcttgaaattcaaaaagttgcagagattcatgatgagcaagca
gctgagaagatgggaattaaagaaggaacaattactgttttagttcattgtggttcaaga
ggatttggccatcaagtttgtagtgattacttgagagttgcagaacaagcaatgagcaaa
tacaacattacattacctgatagagaacttgcatgtgttccaaatacttctgaggaagga
gagtcttacagaaaagcaatgtttgcagctcttaactttgcttggagtaacagacagatg
attactcattggactagaaaatcttttgaacgcgtctttaatcagtcagaatctgatctt
gatatgaaactagtttatgatgttgcacataatattgccaaagtagaaaaacacaaagta
aatggcgaggagagaaaacttgttgttcacagaaaaggtgcaactagggcatttcctgca
aacagggaagaaatcccttcaaagtatcgtcatctaggccaacctgtcttggttcctggc
tctatgggtactgcaagctggattctacttggacagccaaattctatggatctaagcttt
ggttcaactgcccatggcgcaggaagaacaatgtctcgctccaaggccagaaaaaactat
actgaaaatgatgttaaaaaatccctaaatgacaagggaatttttatcaaagcactgacc
agagatggagttgtggaggagacacctcaggcctacaaagacgttgattctgtagttaat
gtttctcataatctaggaattgccaccaaagtggcaaaattagtgcctataggtgtgata
aagggttga
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