Candidatus Nitrosopumilus sp. SW: Nisw_07740
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Entry
Nisw_07740 CDS
T06175
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nisw_07740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niw03019
]
Nisw_07740
03009 Ribosome biogenesis [BR:
niw03009
]
Nisw_07740
Enzymes [BR:
niw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nisw_07740
Messenger RNA biogenesis [BR:
niw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nisw_07740
Ribosome biogenesis [BR:
niw03009
]
Prokaryotic type
rRNA helicases
Nisw_07740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
QDI89423
UniProt:
A0A514LC55
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All DBs
Position
complement(1288864..1290180)
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AA seq
438 aa
AA seq
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MTKFQELGLKEDILKGIKDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSM
LQEIQPKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIRVATVYGGQGMGLQLDALERGV
EIVVATPGRLIDHLKRGSIELRDVSHIVLDEADTMLDMGFVDDISFILDLAPEDRVMSLF
SATMPTEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPVKGQ
SIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR
GIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAITFVSYSSVGDWNLIKRQIKVP
IKDLNEEMGIEISIPDPLKRQMPSRRYGGQSRSNYSRGGRSGGYGRSGGRDSRDDRGGRR
RYNDRGGNRNSYGGRSRW
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttcaagaattaggattaaaagaagacatactaaaaggaattaaagacctt
ggatttgaagaagcatttccaattcaagaggcagtaattccagtattacttacaggaaga
gatgttgtaggacaagcacatacaggatcgggtaaaactgcagcattttccttatcaatg
ctgcaagaaattcaaccaaaaaacggaattcagggtttgatcatggcccccacaagagaa
cttgctatgcagattacagatgagattaaaaaatttggaaaatacactggaattagagta
gcaacagtttatggaggacaaggaatgggacttcaattagacgctctagaaagaggagtg
gaaattgttgtagcaacaccaggtagattaattgatcatctcaaacgaggatcaatagaa
ctcagagacgtttcacatattgttttggatgaagctgacacaatgttagatatgggattt
gttgatgatatttcatttattttagatttagcaccagaagacagagttatgtcgttgttt
tcagcaacaatgccaactgaaattcttagattgtctgaggaatatttgaaaaacccaaaa
caattcttgttagatgcagatgatctcagcggagaaggaattgatcaatcatatctagtc
ataaaagacagggacaaattcaagtatctaattgattttatcaaaccagtaaaaggccaa
tctattgtgttttgctcaacaaaatatagaactagagatgttgcaaaattcttacaccaa
gaaaaatttgatgcagtagcaatagaaggagacatgtcacaacacagaagagagcaatca
atgggaaaattccgtagtggtaaggcagacattctagtggcaacagatgttgcatcaaga
ggcatagatgttccaagagtagagttggtaattaattacgatgttccaaatcaagaaatg
gcatattttcacagaattggaagaactgcaagagcaggagcaaagggtaaagcaattaca
tttgtttcatattcatcagtaggagattggaatcttattaaacgacaaatcaaagtccct
atcaaagatttgaatgaagagatgggaatagaaatttcaattccagatcctctaaaaaga
caaatgccatcaagaagatacggaggtcaatcaagatcaaactattcaagaggaggtcgt
tctggaggatatggaagatcaggtggacgagattcaagagatgatagaggcggtagacga
agatataatgatagaggcggtaacagaaatagttacggcggccgtagtagatggtaa
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