Candidatus Nitrosopumilus sp. SW: Nisw_08300
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Entry
Nisw_08300 CDS
T06175
Symbol
endA
Name
(GenBank) tRNA-intron lyase
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
niw
Candidatus Nitrosopumilus sp. SW
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niw03016
]
Nisw_08300 (endA)
Enzymes [BR:
niw01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Nisw_08300 (endA)
Transfer RNA biogenesis [BR:
niw03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Nisw_08300 (endA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
TSEN34_N
Ribosomal_L22e
Motif
Other DBs
NCBI-ProteinID:
QDI89521
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All DBs
Position
complement(1387462..1387998)
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AA seq
178 aa
AA seq
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MKGELIENRVIVWNIEDSRKLFSGGYYGKPIGIPKPKIEEIDAPLVLDLIESLYLLENKK
ITITKSKHKVTVEQMIEICKKEHHDFDKKYLVYKNFRDKGYIINPGIKFGCDFAVYEKGP
GIDHAPFLIQVYNRNEPITSTGIVLAGRLATTVRKQFILAIPKGKDNVDFLALDWWKA
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggagagttaattgaaaacagagtaattgtttggaatatcgaagactctcgaaaa
cttttcagtggaggatattatgggaaacccatagggattccaaaaccaaaaattgaagaa
attgatgcacctctagttttagatttaattgaatcattgtatttgcttgaaaataaaaaa
attacaattacaaaatcaaaacacaaagttacagtggaacaaatgatagagatttgcaaa
aaagaacatcatgattttgataaaaaatatttagtttacaaaaactttagagataaagga
tacatcatcaatcctggaataaagtttggttgtgattttgcagtatatgaaaaaggtcca
ggtatagaccatgcaccgtttttgattcaagtgtataatagaaatgaaccaattacatca
acagggattgtacttgcaggaagactggcaactacagtaagaaaacaattcattttggca
attccaaaaggcaaagataatgtagactttttagctttagattggtggaaagcctaa
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