Candidatus Nitrosopumilus sp. SW: Nisw_08560
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Entry
Nisw_08560 CDS
T06175
Name
(GenBank) transcription factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
niw
Candidatus Nitrosopumilus sp. SW
Pathway
niw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
niw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Nisw_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niw03021
]
Nisw_08560
Transcription machinery [BR:
niw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Nisw_08560
Prokaryotic type
Archaeal type
TFB
Nisw_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Zn_ribbon_tTFIIB
RB_B
Motif
Other DBs
NCBI-ProteinID:
QDI89565
UniProt:
A0A514LDA5
LinkDB
All DBs
Position
complement(1428461..1429372)
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AA seq
303 aa
AA seq
DB search
MITELVHQKTCRKNKVITDLNTGEVACTNCGAVLSERVVDSGPESLGMSSEEYQTNSRVG
RKISLKMIDMGLSTIIESKDKDATGRGLSSENRRMFYRLRMWDRNSRSANSVKSFQKAFT
MLDGIGAKLGLPEPVIEQTAYLFRKIAAKKILAGRSTAGMLCAAIYITCRMTNTPRTLQD
VASAGNVNKKSIQRIYRFLSRELDITPEIYHPTEFVTRIAKSVNISEKAERLAYRILDLS
ARNGVSASKNPMAMASAAVYLASIKNGEKVPQLKISKVSGISAVTIRDRTKEILKKVGGE
IDG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgattacagaacttgtccatcaaaagacctgtagaaaaaacaaggtcataacggatttg
aatacaggagaagttgcatgtactaactgtggtgctgtcttatctgagagagttgtagat
agtggtccagaaagtttgggtatgtcaagtgaagaatatcaaaccaatagtagagttgga
agaaaaatttcattgaaaatgatagacatgggtttgtcaaccatcatagaatctaaagat
aaggatgcaacaggaagaggattgtcaagtgaaaacagaagaatgttttatcgcctaaga
atgtgggataggaatagtcgttcagcaaattctgtcaaatcatttcaaaaagcattcact
atgcttgatggaattggtgcaaagttaggacttccagagccagtcatagagcaaacggct
tatttatttagaaaaattgctgcaaaaaagattcttgcaggaagatctactgcagggatg
ctatgtgctgcaatatacattacatgcagaatgacaaatactccaagaacactgcaagat
gtcgcaagtgcaggaaatgtcaataaaaaaagcattcagagaatttacagatttctttca
agagaactagacattacaccagaaatttatcatccaacagaatttgtaactcgaattgca
aagtctgtaaatatttcagaaaaggcagaaagattagcatacagaattctagatctttct
gcaagaaacggggtttcagctagtaaaaatcccatggcaatggcatctgctgcagtatat
ctggcatcaatcaaaaacggggaaaaggtacctcagttaaaaatttcaaaagtgtcagga
attagtgcagtgacaatcagagataggacaaaagaaattctgaaaaaagtaggaggtgaa
attgatgggtag
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