KEGG   Ningiella algicola: PN836_016765
Entry
PN836_016765      CDS       T11592                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
nix  Ningiella algicola
Pathway
nix03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nix00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PN836_016765 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nix03021]
    PN836_016765 (rho)
   03019 Messenger RNA biogenesis [BR:nix03019]
    PN836_016765 (rho)
Transcription machinery [BR:nix03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PN836_016765 (rho)
Messenger RNA biogenesis [BR:nix03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PN836_016765 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 S1CSD-TOTE-2 AAA AAA_25
Other DBs
NCBI-ProteinID: XJJ50534
LinkDB
Position
3835884..3837149
AA seq 421 aa
MNLTELKEKPISELVALAEKMGLENLARARKQDIIFSILKAHAKGGEDIFGDGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN
YDKPENSRSKILFENLTPLHANQRLRMERGNGSTEDITARVLDLASPVGCGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPDCTLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTSQVELQKMWILRKIVHEMSEIDAMEFLISRLSMTKTNDEFFDSMKRQK
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatctaaccgaacttaaagaaaaacccattagcgaattagtggcattagccgagaaa
atggggctcgaaaaccttgccagagcgcgcaagcaagacattatattctccatactaaaa
gcgcacgcgaaaggcggcgaagacatcttcggcgacggtgtgcttgaaattctccaagat
ggtttcggatttttacgatcttccgactcttcctatcttgcggggcctgatgacatttac
gtttcacccagtcaaatcagacgctttaacttgcgtacaggtgacacgatcgctggcaaa
ataagaccgccgaaagacagcgaacgttattttgcgcttttgaaaatcagagaagtcaat
tacgacaagcctgagaattctcgcagtaaaattttattcgaaaacttaacaccattgcat
gccaatcagcgtttgcgtatggagagaggcaacggcagtactgaagacattactgctcgt
gtgctggatctggcatcacctgtgggttgtggtcagcgcggattgattgttgcgccgcca
aaagcaggtaaaaccttattgcttcaaaatattgcgcagtcgattgctgccaatcatccg
gattgcacgctcatggtcctacttatcgatgagcggccggaagaggtgacggaaatgcag
cgcttggttcaaggtgaggtggttgcctctactttcgatgagccggcaagccgtcacgtt
caagtggccgaaatggtcatagaaaaggcaaaacgcttggttgagcataaaaaagatgtg
gtgatactgcttgattctattacgcgcttggcgcgcgcatacaacactgttattccatcc
tcgggcaaagtattaaccggtggtgtggatgcaaatgcattgcacaaacctaaacgcttc
tttggtgctgcacgaaatgtggaagagggcggaagcttaacgattattgcaactgccctt
atcgatacaggctctaagatggatgaagtcatctacgaagagttcaagggtacaggcaac
atggagctgcacttaaatcgtaagattgctgagaagcgagtgttcccagccattgacttt
aaccgcagcggcacgcgtcgtgaagagttattgacgagccaagttgaacttcagaaaatg
tggattttgagaaaaatcgtgcatgaaatgtctgagattgacgcgatggagttcttaata
agccgcttgtccatgacgaagacaaatgatgagttcttcgattcaatgaagcggcagaaa
ggctaa

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