Nitratireductor mangrovi: FQ775_18460
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Entry
FQ775_18460 CDS
T06518
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
niy
Nitratireductor mangrovi
Brite
KEGG Orthology (KO) [BR:
niy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niy03019
]
FQ775_18460 (hrpB)
Enzymes [BR:
niy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FQ775_18460 (hrpB)
Messenger RNA biogenesis [BR:
niy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FQ775_18460 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
HA2_N
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDZ02206
UniProt:
A0A5B8L2J9
LinkDB
All DBs
Position
complement(4190012..4192480)
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AA seq
822 aa
AA seq
DB search
MRSVPALPDLPVVECLPALRAALAGDGAAVLVAPPGAGKTTLVPLALLGEAWLGDGIILL
LEPRRLAARAAARRMAVLLGENTGETVGYVMRMDRKASAKTRVLVVTEGVLARMILDDPE
LKGVSAVIFDEFHERSLDGDFGLALALDVRNGLRTDLRLLVMSATLDGARVAKLLSNAPV
IESAGRGFPVDIRYHERSANEALEEAMARQIRTVLASETGSVLAFLPGQREIERTAERLD
GRVSADVEVMKLFGAMDGKAQDAAIRPAPAGRRKVVLATAIAETSITIDGVRVVIDCGYS
RLPKFEPATGLTRLETVRVSRASADQRAGRAGRTEPGAAIRLWRAEQTASLPAFTPPEIL
EADLSGLMLDCAAFGVTNPARLAFLDPPPKAALETARALLLDLGAIDADARLTADGEAMR
KLALPVRLAHMVAKASARGSAGRASELAVLLTERGLGGSDPDLDARLDRFRRDRGQRAES
ARILARRIAGSATEPRRAVADEPTSGLLLLEAWPDRVARARGERGRFVLANGRGAEIDAS
DRLAGEEFLVVADLQGKARNARIAAAARITEADIVDRLGERIGVRSETMFDTERKSVRTR
ETRRLGAITLGERLLPPPTGVEADQAILEAIRVHGLAILPWGKTSTALRHRLGWLHRGLG
TPWPDVADNALLTRLEDWLAPFLPGSAAVVDISDRALADGLASLVPYELQNSIGRLAPTH
YDAPSGSRVPIEYSGEEPVLAIRVQELFGLAEHPAIVEGRVPLTLELLSPANRPIQTTRD
LPGFWRGSWRDVRSDMRGRYPKHYWPEDPRAAEATARAKPRR
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagcgttcccgcactacccgatctgcccgtcgtggaatgcctcccggccctgcgc
gcagcgcttgcgggtgacggcgcggccgtgctcgtcgccccgcccggcgccggcaagacc
acgctcgtgccgctggcgctgctcggcgaggcgtggctcggcgacggcatcatccttttg
ctcgaaccgcgccgcctggcggcgcgcgccgctgccaggcgcatggcggtgctgctgggc
gaaaatacgggcgagacggtcggttacgtcatgcgcatggacaggaaggcgtcggcaaag
acgcgtgtcctcgtcgtcaccgagggcgtgctggcgcgcatgatcctcgacgatccggaa
ctcaagggcgtctcggccgtgatcttcgacgagttccacgagcgctccctcgacggcgat
ttcgggttggcgctggcgcttgacgtgaggaacggactcaggaccgatctgcggctgctg
gtcatgtcggcgacgcttgacggggcgcgggtggcaaaactcctaagcaacgcaccggtg
atcgagagcgccggccgcggctttccggtcgacatccgttaccacgagaggtcggccaac
gaagcgctcgaagaagcaatggcacggcaaatcaggacggtactggcttcggaaaccggc
agcgtcctcgcatttctgccgggccagcgcgagatcgagcgcactgccgagcggcttgac
ggcagggtcagtgcggatgtcgaggtaatgaagctcttcggcgccatggacggcaaggcg
caggacgcggcgatccgcccggcgccggcgggccggcgcaaggtggttctggcgaccgcc
atcgccgaaacctcgatcaccatcgacggggtgcgggtggtcatcgattgcggttattcg
cggctgccgaaattcgaaccggccaccggcctgacgcggctggaaaccgtgcgtgtgtcc
cgcgcgtccgcggaccagcgcgccggtcgcgccggccgcaccgaaccgggcgccgcgatc
aggctgtggcgagcggaacagaccgcgtccctgcccgccttcacgcccccggaaatcctc
gaggccgacctgtccggcctgatgctcgactgtgcggccttcggcgtcacgaaccctgcg
cggcttgcctttctcgacccgccgccgaaagccgcgctggagacggcgcgcgccctgctt
ctcgacctgggcgcgatcgatgccgacgccaggcttaccgcggacggcgaggcaatgcgc
aagctcgctttgccggtacggcttgcgcacatggttgcgaaggcgagcgcacggggaagt
gcggggcgcgcttcggaactcgcggtgctcctgaccgagcgcgggctgggcggctcggac
cccgatctcgatgcccggctggatcgcttccgccgcgatcgcggccaacgcgccgaaagt
gcgcgcattctggccaggagaattgccgggtcggccacggagcctcgacgcgcagtcgcg
gacgaaccaacctcgggtctcctgttgctcgaggcctggccggaccgcgtcgccagggcc
cgtggcgagcgtggccggtttgtgcttgccaatggccgcggcgccgaaatcgatgcctcc
gaccggctcgccggcgaggagtttctggttgtggccgacctgcagggcaaggcgcgcaac
gcccgcatcgcggcagcggccagaattacagaggcggacatcgtcgacaggctcggggag
cggatcggggttcgcagcgaaacgatgttcgacacggagaggaagtccgtccgcacgcgg
gagaccaggcggcttggcgcgatcacgctcggcgaacgcctgctgccgccgccgacgggt
gtggaggcagatcaggcgatcctggaagcgatacgcgtccatggcctcgccatcctgccc
tgggggaaaacgtcgaccgccttgaggcacaggctgggttggctccatcgagggcttggt
acaccatggcccgacgttgccgataatgccctgctcacgcgcctcgaagactggctggcg
ccgtttcttcctggcagcgcggcagttgtcgacatttcagaccgcgccctggccgacggg
ctggcctcgctggttccatacgaattgcagaacagcatcggccggctcgcgccgacgcat
tacgacgcgccgtcgggcagccgcgttcctatcgaatattcgggcgaggagccggtgctg
gcgatccgggtgcaggaattgttcgggctggccgaacatcccgcgattgtcgaaggccgg
gtgccgctgacgctcgagctgctttcgccggcgaaccgaccgatccagaccacacgcgac
ctgccgggtttctggcgcggctcctggagagatgtgcgcagtgacatgcgcggccgctac
ccgaagcattactggccggaagaccccagggccgccgaggcgaccgcgcgcgccaagccg
cgccgctga
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